Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0457
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52550.1 68414.m05932 expressed protein                             30   1.7  
At3g21310.1 68416.m02692 expressed protein contains Pfam profile...    28   5.2  
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10...    28   5.2  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    28   5.2  
At3g16710.1 68416.m02134 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At3g12150.1 68416.m01514 expressed protein                             28   6.8  
At1g21990.1 68414.m02751 F-box family protein contains F-box dom...    28   6.8  
At5g35190.1 68418.m04170 proline-rich extensin-like family prote...    27   9.0  

>At1g52550.1 68414.m05932 expressed protein
          Length = 131

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -3

Query: 212 PAPSRHSRSPARLRPLPVTIQFVYQ*YTPVXRRPIWRSSPMTPPS 78
           P PS    SP R  PLP    F+     PV R  +    P TPPS
Sbjct: 24  PLPSPSFFSPFRSSPLPSQTLFLVPTPKPVRRIAVAPLGPPTPPS 68


>At3g21310.1 68416.m02692 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 383

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 671 WHDVSQSESKHLCWRSSARSFALDFPLHHQPLNGVLIMSDVP 546
           WH ++ SE   L WR+S     LD+P    P    + ++  P
Sbjct: 87  WHSMNDSE---LLWRASMEPRILDYPFKRVPKMAFMFLTKGP 125


>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 596 PLHHQPLNGVLIMSDVPEELEDS 528
           P H QP +G+L+ +DVPE  E S
Sbjct: 811 PQHWQPNSGLLMANDVPENPEGS 833


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -3

Query: 131 TPVXRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPRLPPWDS 9
           TP+         P TP +  R    R  I D RPR P  +S
Sbjct: 239 TPIHESAATERRPQTPETRPRTPEHRSAIPDTRPRTPIHES 279


>At3g16710.1 68416.m02134 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 434

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
 Frame = -2

Query: 360 NAYIFPLVLSNTCKKEQTQTVTAI------EALLSDTLDIS*VILRSDIESRERVPGPVT 199
           N  I+  ++   CK ++ +    I      + ++++T+  + +I    +  R  V   V 
Sbjct: 254 NEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVF 313

Query: 198 SQPESRKAPPSPRYYSVCI-SMIYPGXPETHLALF 97
           +Q  SR+APP  R Y+V +  +   G  E  L +F
Sbjct: 314 NQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIF 348


>At3g12150.1 68416.m01514 expressed protein
          Length = 363

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = -3

Query: 239 PISSRGNAFPAPSRHSRSPARLRPLPVTIQFVYQ*YTPVXRRPIWRSSPMTPPSTTRVG- 63
           P  SRG   P      R   RL PL V  Q     + P   RP+WR+   T  +T R G 
Sbjct: 32  PFFSRGWGGPNLELLERMVQRLFPLEVQGQN----WPPPLVRPVWRTVWETKTATLREGV 87

Query: 62  -RRRCFIDDFRPRLPP 18
            +  C  D+    LPP
Sbjct: 88  FQTPC-ADELTAALPP 102


>At1g21990.1 68414.m02751 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 465

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 168 SPRYYSVCISMIYPGXPETHLALFADDTAIYY 73
           SP    + IS  YP  PETH+ ++ D  ++ Y
Sbjct: 208 SPSIKRLTISHDYPDYPETHIYVWFDTPSLVY 239


>At5g35190.1 68418.m04170 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 328

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -2

Query: 213 PGPVTS-QPE-SRKAPPSPRYYSVCISMIYPGXPETHLALFADDTAIY 76
           P P  S  PE S K+PP P YYS  + + Y   P   +  F      Y
Sbjct: 259 PPPYYSPSPEVSYKSPPPPPYYSPSLEVSYKSPPPLFVYNFPPPPPFY 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,318,035
Number of Sequences: 28952
Number of extensions: 323705
Number of successful extensions: 942
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)