Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0456
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.0  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 519 LTKYFNFETINEKQKFIFTVHILNYH 442
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 519 LTKYFNFETINEKQKFIFTVHILNYH 442
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 519 LTKYFNFETINEKQKFIFTVHILNYH 442
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 251  TFWSASTSFSYWCLFIIRR--LSRIFCSGGSWRPTS 150
            T+WS++T+  +W     RR   +R   +  + RPT+
Sbjct: 1041 TWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTT 1076


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 144 KKRGRPPAATRTKDSAKSSDDEQA 215
           K+R    AA R++D+ ++ +DE A
Sbjct: 141 KRRKNNEAAKRSRDARRAKEDEIA 164


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 510 YFNFETINEKQKFIFTVHILNYH 442
           YFN          + TV +LNYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 510 YFNFETINEKQKFIFTVHILNYH 442
           YFN          + TV +LNYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 81  VEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 212
           V++ G+ +P+    + ES E K    P  + + KDS+  S+DE+
Sbjct: 70  VQQAGK-KPENVKKEDESDEEK----PTTSFKLKDSSSDSEDER 108


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -1

Query: 510 YFNFETINEKQKFIFTVHILNYHREQL 430
           Y  F+T+  +++F+F  ++    R +L
Sbjct: 250 YSKFQTLELEKEFLFNAYVSKQKRWEL 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,281
Number of Sequences: 336
Number of extensions: 2479
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)