Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0456
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     29   3.0  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    29   3.0  
01_06_1259 - 35810926-35811777                                         29   3.9  
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841...    29   5.2  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    29   5.2  
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    28   6.9  
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731...    28   6.9  
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904...    28   6.9  

>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 478 KVYFHSTHTELSQRTITLRFLDPQVFIGLQILHLLHP 368
           +VYF++   +L+  T+    L   VFIGL +L L  P
Sbjct: 14  RVYFYAFDIDLASSTLVTGMLSVHVFIGLLLLSLHAP 50


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 85  KRKDAVDQKPMEHNLSRKNLKNEVGLQLPPEQKI 186
           +++ ++D+    HN SRK   ++V   LPPE+++
Sbjct: 679 EKEHSMDESNSTHNRSRKRTPDQVDGSLPPEKQV 712


>01_06_1259 - 35810926-35811777
          Length = 283

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +3

Query: 66  DGSTVVEKKGRGR------PKANGTQPESKELKKRGRPPAATRTKDSAKSSD 203
           + S+   K+GR R      P+ + T P + + K+RGRPP       +A+S++
Sbjct: 189 NASSQPRKRGRPRKDATMYPRKDATIPANTQPKRRGRPPKNRNLSGNAQSAE 240


>09_04_0600 +
           18883094-18883393,18883606-18883755,18883851-18884142,
           18884697-18884858,18884958-18885021,18887573-18888080
          Length = 491

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 485 SLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSC 601
           S M   L+  V  H S  +L Y D+TT+ + + +P  +C
Sbjct: 450 SRMRLALQLCVRRHTSWCMLLYSDTTTYGLNVTAPSGAC 488


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 63  DDGSTVVEKKGRGRP--KANGTQPESKELKKRGRPPAATRTKDSAKSSDD 206
           D GS   E  G+     K  GT+ +SKEL+K+    +   TKD +K + D
Sbjct: 33  DQGSEKKEMSGKNIKSIKETGTKGQSKELQKK-ESKSRKSTKDKSKKNKD 81


>07_03_1632 +
           28271559-28271645,28272641-28272713,28273030-28273361,
           28273455-28274791,28275451-28275848,28275963-28277644,
           28277727-28277884,28278645-28278802,28279110-28279270,
           28279826-28280014
          Length = 1524

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 85  KRKDAVDQKPME-HNLSRKNLKNEVGLQLPPEQKILLSLL 201
           K+K AVD K  +  N     +KNE+ ++ P  QKI+L  L
Sbjct: 224 KKKKAVDTKRSKSRNDVSAVMKNEIDIETPAGQKIVLEAL 263


>03_02_0917 +
           12372122-12372422,12372487-12372524,12373103-12373186,
           12373796-12374504,12374641-12374729,12374834-12374903,
           12374977-12375060,12375097-12375239,12375337-12375418,
           12375605-12375687,12375769-12375835,12376287-12376376,
           12377631-12377737,12377862-12377969
          Length = 684

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 214 ACSSSEDLAESFVLVAAGGRPRFL 143
           AC S ED   SF    +GGRP+F+
Sbjct: 72  ACKSFEDFDISFKSTRSGGRPKFV 95


>03_02_0514 +
           9038606-9039790,9040211-9040432,9040548-9040655,
           9041608-9041802,9041905-9042153,9042525-9042672,
           9042673-9042779,9043311-9043475,9044506-9045948
          Length = 1273

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 512 LVNSHVSSNLLNYRDSTTFSIEIISP 589
           +V S  SSNLLN +D  +F +E + P
Sbjct: 492 IVGSVTSSNLLNPQDDLSFKLEYVHP 517


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,689
Number of Sequences: 37544
Number of extensions: 232935
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)