Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0451
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528...    30   2.3  

>06_01_0723 -
           5287864-5287885,5287971-5288043,5288521-5288626,
           5288829-5288891,5290165-5290249,5290337-5290377,
           5291260-5291323,5291647-5291716,5291886-5291960,
           5292070-5292164,5293671-5293771,5293852-5293874,
           5293956-5294031,5294229-5294322,5294493-5294548,
           5296204-5296327,5296607-5296743
          Length = 434

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 615 SVDYYCHIWPAXICIMXKYLCLFIYCFFRVSVFIYFAVIFV 493
           S+  Y  I  A I ++ + L LF+YC + V ++++ AV  V
Sbjct: 375 SIKRYIIITIARIPLVDELLVLFLYCAYTVGLYLHLAVSVV 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,150,931
Number of Sequences: 37544
Number of extensions: 213273
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)