Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0451
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.7  

>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -1

Query: 606  YYCHIWPAXICIMXKYLCLFIYCFFRVSV---FIYFAV--IFVLNV 484
            Y C I    + +  +Y+CL+  C F +SV   F+Y     IF L+V
Sbjct: 1985 YLCAICIFALSVSLRYICLYAICIFALSVSLRFLYLCAICIFALSV 2030



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -1

Query: 606  YYCHIWPAXICIMXKYLCLFIYCFFRVSV---FIYFAV--IFVLNV 484
            Y+C I    + +  +YLCL   C F +SV   ++Y     IF L+V
Sbjct: 1711 YFCTICVFALSVSLRYLCLCAICVFALSVSLRYLYLCAICIFALSV 1756



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 606  YYCHIWPAXICIMXKYLCLFIYCFFRVSVFIYF 508
            Y C I+   + +  +Y+CL  +C F +SV + +
Sbjct: 1900 YLCAIFVFALSVSLRYICLCAFCIFALSVSLRY 1932


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,036
Number of Sequences: 59808
Number of extensions: 281311
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)