Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0450
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       28   0.069
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.37 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   4.6  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   8.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   8.0  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 369 IFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRG--KPRSIWSDNGTNFVGACNELKGV 542
           +FV + V +  ++L     + A IAA +      G  KP+ + SD+GT F+   N  +  
Sbjct: 219 VFVVIDVFSKFLKLYPLRKATAKIAAKRLIEDFSGYIKPKCVLSDHGTQFIS--NTWQNS 276

Query: 543 LSNSDIASFMS 575
           L  +DI   +S
Sbjct: 277 LRAADIQPTLS 287


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 565 DAMSEFERTPLSSLQAPTKFVP 500
           D +   E+TPLSS+  P+ F P
Sbjct: 12  DMLDSQEKTPLSSVSYPSMFTP 33


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 159 AEICLRLSSETA*NVLGIEHKMFNPSWVNYLKLVLIYNFL 278
           + +C  +S+E   N+L + H+ F    +  L+L  I N L
Sbjct: 269 SHVCQNVSTEVIGNILRLMHRRFE---ITALRLFTIDNKL 305


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 451 KDSCLVEASPAAYG 492
           KD C+V+A+ A+YG
Sbjct: 114 KDWCVVDATFASYG 127


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 451 KDSCLVEASPAAYG 492
           KD C+V+A+ A+YG
Sbjct: 114 KDWCVVDATFASYG 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,542
Number of Sequences: 336
Number of extensions: 3435
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)