Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0450
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    28   1.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   2.2  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    26   6.6  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   8.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   8.7  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 544 RTPLSSLQAPTKFVPLSDHMLRGLPRRDTNLLRAAMYASDDNAVTSSI*TAFTARHT 374
           R PL  +Q  TK + + DH+   LPR   ++    ++A    +  SS  + F+A+ +
Sbjct: 275 RDPLEMIQIVTK-MNIPDHLTATLPRSSDDIQNDCLFALRQVSKRSSYHSVFSAQES 330


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 471 GKPRSIWSDNGTNFVGACNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHF 623
           G+PR  W  N    V    +    LS  D   F+  +G  F  + PYSP+F
Sbjct: 66  GQPREAWLLNVHPTVIESTKGNSTLSAVDFY-FIQDDGDTFRCTIPYSPYF 115


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 75  SILNICISYMLDHSSY*LTYARVT 146
           +IL  C+SY  +H S  L Y  VT
Sbjct: 219 NILTTCLSYFTEHKSVNLLYKLVT 242


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 372 FVCLAVKAVHIELVTALSSEAYIAALK 452
           F CL+   V + L+ A+ +EAY+A  K
Sbjct: 348 FFCLSNPNVALHLIVAIGNEAYMALPK 374


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 428 GGVHSCSQKIRVS---SRQAPQHMVRQWDKFCWCLQRTQRRPF 547
           GGV SCS+K+      + Q P++    + KF + L  +Q   F
Sbjct: 468 GGVASCSEKVGCRCDFANQDPENYEDSYRKFLYALATSQIETF 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,242
Number of Sequences: 5004
Number of extensions: 56631
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)