Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0450
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390 35 0.079
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 35 0.079
01_06_0669 - 31063722-31063856,31064001-31064090,31064275-310643... 31 0.74
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 31 1.3
11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721 29 3.0
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 29 3.9
11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786 29 3.9
03_05_0310 + 23008915-23009841,23010401-23011162 29 3.9
11_04_0147 - 14095039-14095937,14096914-14097379 28 9.1
08_02_0360 + 16196712-16197560,16198126-16198875 28 9.1
04_04_0944 - 29557360-29557485,29557570-29557698,29557875-295579... 28 9.1
04_01_0251 - 3294223-3294272,3295189-3295264,3295789-3296052,329... 28 9.1
03_04_0175 - 18092055-18092583,18092819-18093378 28 9.1
01_05_0015 - 17164024-17164193,17164308-17164713 28 9.1
>05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390
Length = 397
Score = 34.7 bits (76), Expect = 0.079
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 549 NSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
N+ + F+ +EGI FS PY P NG+ E
Sbjct: 96 NTQVEEFLDEEGIKHEFSAPYDPPQNGIVE 125
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 537 GVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
G +++ ASF + GI +PPYSP NG+AE
Sbjct: 458 GEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAE 491
>01_06_0669 -
31063722-31063856,31064001-31064090,31064275-31064356,
31064448-31064494,31065074-31065130,31065368-31065433,
31065537-31065558,31065641-31065753,31065903-31065974,
31066839-31066961,31067052-31067141,31067504-31067545,
31067791-31067878,31069167-31069286,31069382-31069434
Length = 399
Score = 31.5 bits (68), Expect = 0.74
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 342 CKLVKSYLCIFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRGKPRSIWSDNGTNFVGA 521
C + S IFV V+A H+EL+ LSS I L R + + K R +N VG
Sbjct: 125 CGIDSSKASIFVQSHVRA-HVELMWLLSSSTPIGWLNRMIQFKEKSRKAGDEN----VGV 179
Query: 522 CNELKGVLSNSDIASFMS 575
VL SDI + S
Sbjct: 180 ALLTYPVLMASDILLYQS 197
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 549 NSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
+++ ASF + GI +PPY P NG+AE
Sbjct: 282 SNEFASFCEEFGIIHERTPPYLPQSNGVAE 311
>11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721
Length = 287
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 465 RRGKPRSIWSDNGTNFVGACNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
R G PR + SD G++F+ + +F+ + G N + PY P +G AE
Sbjct: 67 RFGTPRMVISDGGSHFI-----------DKTFRNFLQELGAQHNIAAPYHPQTSGQAE 113
>12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 556 SEFERTPLSSLQAPTKFVPLSDHMLRGLPRRDT 458
+EF P ++ KF+P D +LRG RR T
Sbjct: 1031 AEFAHAPRPTVTMVEKFIPREDGLLRGPQRRTT 1063
>11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786
Length = 399
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Frame = +3
Query: 354 KSYLCIFVCLAVKAVH--IELVTALSSEAYIAALKRFVS----RRGKPRSIWSDNGTNFV 515
KS C ++ + V V +E + ++EA A K F R G PR + SD G++F+
Sbjct: 51 KSRNCEYILVVVDYVSKWVEAMPCSATEAKHAK-KMFTEIIFPRFGTPRMVISDGGSHFI 109
Query: 516 GACNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
N + + G N + PY P +G AE
Sbjct: 110 -----------NKTFQDLLREMGAKHNVATPYHPQTSGQAE 139
>03_05_0310 + 23008915-23009841,23010401-23011162
Length = 562
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = +3
Query: 354 KSYLCIFVCLAVKAVH--IELVTALSSEAYIAA--LKRFVSRR-GKPRSIWSDNGTNFVG 518
KS C ++ +AV V +E + ++EA A F+ R G PR + SD G++F+
Sbjct: 51 KSRNCEYILVAVDYVSKWVEAMPCSAAEARHAKKMFTEFIFPRFGTPRMVISDGGSHFI- 109
Query: 519 ACNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
+ + + G N + PY P +G AE
Sbjct: 110 ----------DKTFRDLLREMGAKHNVATPYHPQTSGQAE 139
>11_04_0147 - 14095039-14095937,14096914-14097379
Length = 454
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 475 SPAAYGPTMGQILLVLATNSKASFQT 552
+PAA P +G L++L T+S +SF+T
Sbjct: 114 APAAAAPELGVPLMLLMTSSASSFRT 139
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 27.9 bits (59), Expect = 9.1
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Frame = +3
Query: 354 KSYLCIFVCLAVKAVH--IELVTALSSEAYIAALKRFVS----RRGKPRSIWSDNGTNFV 515
KS C ++ +AV V IE + +++A A K F R G PR + SD G++F+
Sbjct: 25 KSRNCEYILVAVDYVSKWIEAMPCSAADARHAK-KMFTETIFLRFGTPRMVISDGGSHFI 83
Query: 516 GACNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
+ + + G N + PY P +G AE
Sbjct: 84 -----------DKTFRDLLREMGAKHNVATPYHPQTSGQAE 113
>04_04_0944 -
29557360-29557485,29557570-29557698,29557875-29557917,
29558321-29558400,29558493-29558804
Length = 229
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 441 AALKRFVSRRGKPRSIWSDNGTNFVGACNELKGVLSNSDI 560
+ALK V R K +SI +G + + +E + L NSDI
Sbjct: 171 SALKEDVQHRNKGKSIRMGSGNRRIPSAHESREKLRNSDI 210
>04_01_0251 -
3294223-3294272,3295189-3295264,3295789-3296052,
3296278-3296531,3296826-3296929,3297204-3297679
Length = 407
Score = 27.9 bits (59), Expect = 9.1
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Frame = +3
Query: 354 KSYLCIFVCLAVKAVH--IELVTALSSEAYIAALKRFVS----RRGKPRSIWSDNGTNFV 515
KS C ++ +AV V +E + +++A A K F+ R G PR + SD G++F+
Sbjct: 51 KSRNCEYILVAVDYVSKWVEAMPCSTADAKHAK-KMFIEIILPRFGTPRMVISDGGSHFI 109
Query: 516 GACNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
+ + G N + PY P +G AE
Sbjct: 110 -----------DKTFRDLLQDMGAKHNVATPYYPQTSGQAE 139
>03_04_0175 - 18092055-18092583,18092819-18093378
Length = 362
Score = 27.9 bits (59), Expect = 9.1
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +2
Query: 470 RQAPQHMVRQWDKFCWCLQ 526
++ P H +R++++ CWCL+
Sbjct: 51 QENPYHHLREFEQLCWCLK 69
>01_05_0015 - 17164024-17164193,17164308-17164713
Length = 191
Score = 27.9 bits (59), Expect = 9.1
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +3
Query: 354 KSYLCIFVCLAVKAVHIELVTALSSEAYIA--ALKRFVS----RRGKPRSIWSDNGTNFV 515
KS C ++ +AV V + V A+S A A A K F+ R G PR + SD G++F+
Sbjct: 51 KSRNCEYILVAVDYVS-KWVEAMSCSAVDAKHAKKMFIEIIFPRFGTPRMVISDGGSHFI 109
Query: 516 GACNELKGVLSNSDIASFMSQEGIDFNFSPPYSP 617
+ + + ++G N + PY P
Sbjct: 110 -----------DKTFRNLLREKGAKHNVATPYHP 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,459,431
Number of Sequences: 37544
Number of extensions: 355726
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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