Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0450
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    51   8e-07
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    51   1e-06
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    51   1e-06
Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 23/49 (46%), Positives = 30/49 (61%)
 Frame = +3

Query: 366  CIFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRGKPRSIWSDNGTNF 512
            C+  C   +  HIELV   S++A+I A++RFVS RG P  I SDN   F
Sbjct: 929  CVLSCATTRLTHIELVQQCSTKAFINAIRRFVSERGIPDRIVSDNAPQF 977



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 134  RQSYWPLXGRNLSKTVVRNCLKCFRY-RAQNVQPIMGQLPKTRTDLQFPFLNCSVDYAGP 310
            R+  W    R   K ++  C+KC RY RA    P M  +P  R     PF N  +DY GP
Sbjct: 854  REKAWIPCLRRQVKKIIGKCVKCQRYNRAPMKYPNMADMPSFRVRRSRPFENTGLDYFGP 913

Query: 311  I 313
            +
Sbjct: 914  M 914


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
 Frame = +3

Query: 354  KSYLCIFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRGKPRSIWSDNGTNF-VG---A 521
            K+Y+ I+ CL  +A  +EL+   ++  +I +L    +R G P +I+SDN   F +G    
Sbjct: 1821 KAYVLIYTCLVTRAAKLELIPDGTTARFIESLGIIFNRVGVPETIYSDNAQTFLLGEKIL 1880

Query: 522  CNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
              ++   +++  + SF++ + I+F    P +P   G+ E
Sbjct: 1881 SEDVNSDITSETLTSFLATKDIEFRHITPLAPWQGGIYE 1919



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = +2

Query: 32   PIVHCSKHALTKXXXXXXXXXXXXXXXXXXXXXIRQSYWPLXGRNLSKTVVRNCLKCFRY 211
            PIV  +KH L +                         YW L    ++  V+R+C+ C + 
Sbjct: 1717 PIVIHNKHVLAELIMRETHEINGHLPELYTQKAASLKYWILCAGTVAAKVIRSCVVCQKV 1776

Query: 212  RAQNVQ-PIMGQLPKTRTDLQFPFLNCSVDYAGPI 313
             A+  + P    LP  RT+   PF +  +DY GPI
Sbjct: 1777 NAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPI 1811


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
 Frame = +3

Query: 354  KSYLCIFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRGKPRSIWSDNGTNF-VG---A 521
            K+Y+ I+ CL  +A  +EL+   ++  +I +L    +R G P +I+SDN   F +G    
Sbjct: 1821 KAYVLIYTCLVTRAAKLELIPDGTTARFIESLGIIFNRVGVPETIYSDNAQTFLLGEKIL 1880

Query: 522  CNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 638
              ++   +++  + SF++ + I+F    P +P   G+ E
Sbjct: 1881 SEDVNSDITSETLTSFLATKDIEFRHITPLAPWQGGIYE 1919



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = +2

Query: 32   PIVHCSKHALTKXXXXXXXXXXXXXXXXXXXXXIRQSYWPLXGRNLSKTVVRNCLKCFRY 211
            PIV  +KH L +                         YW L    ++  V+R+C+ C + 
Sbjct: 1717 PIVIHNKHVLAELIMRETHEINGHLPELYTQKAASLKYWILCAGTVAAKVIRSCVVCQKV 1776

Query: 212  RAQNVQ-PIMGQLPKTRTDLQFPFLNCSVDYAGPI 313
             A+  + P    LP  RT+   PF +  +DY GPI
Sbjct: 1777 NAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPI 1811


>Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical
           protein D2089.3 protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 528 RCKHQQNLSHCRTICCGACLDE 463
           RC H ++ + C  +CCG C+DE
Sbjct: 66  RCWHGESCASC--VCCGECVDE 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,091,156
Number of Sequences: 27780
Number of extensions: 322543
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)