Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0450
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.76 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   1.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   1.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 366 CIFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRGKP--RSIWSDNGTNFVGACNELKG 539
           C   CL      +E+  +L SEA  AA  RF+    +P  +++   +  N V  CN  + 
Sbjct: 666 CETFCLDDDDTLLEVALSLGSEALSAATVRFIEAEPQPIGKALSKCHNRN-VTTCNMFRK 724

Query: 540 VLSNSDIAS 566
              + D +S
Sbjct: 725 TNLSGDSSS 733


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 527 VASTNKICP--IVGPYAAGLASTRHESFESSYVRLR*QCGDELDMNSFYC 384
           VA + ++C   +VGPY  GL +T   +  +  +     CG  + +N F+C
Sbjct: 14  VAMSQRLCIQLVVGPYVIGLMNTMTHTTNAFCLPF---CGPNV-INPFFC 59


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 527 VASTNKICP--IVGPYAAGLASTRHESFESSYVRLR*QCGDELDMNSFYC 384
           VA + ++C   +VGPY  GL +T   +  +  +     CG  + +N F+C
Sbjct: 13  VAMSQRLCIQLVVGPYVIGLMNTMTHTTNAFCLPF---CGPNV-INPFFC 58


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 344 TASPFTDQQSKLAQHNPHYNSRKEIVNQYE 255
           T+ P  D   + +++N H N   E +NQ E
Sbjct: 50  TSQPHQDHNKEKSKNNHHCNQDTEKLNQLE 79


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +3

Query: 366 CIFVCLAVKAVHIELVTALSSEAYIAALKRFV-----SRRGKPRSIWSDNGTNF 512
           C F+ +  K VH   + A++++      + F      SR+G  R+ WS +GT F
Sbjct: 121 CTFISVNGKEVHSGNIEAVTTKEKAKFPQEFFPECKWSRKGFLRTRWSISGTVF 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,901
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)