Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0450
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09080.1 68416.m01067 transducin family protein / WD-40 repea...    29   4.4  
At3g04450.1 68416.m00472 myb family transcription factor contain...    28   7.6  

>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
           family protein contains 8 WD-40 repeats; similar to
           JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
          Length = 1026

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 377 VPCSKSCSYRARHRIVIGGVHSCSQKIRVSSRQAPQ 484
           V CS  C Y A   +V+  V SC+Q   V S + P+
Sbjct: 35  VTCSSKCVYLAGCVVVVYDVDSCTQSHLVVSHRMPK 70


>At3g04450.1 68416.m00472 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 438

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 448 SKDSCLVEASPAAYGPTMGQILLVLATNSKASFQTQTLRH 567
           +  S + EA P+A  P + Q  L  ATNS+ S  TQ L++
Sbjct: 377 TSSSSMPEADPSAPSPNLSQPFLHKATNSEPSI-TQKLQN 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,155,059
Number of Sequences: 28952
Number of extensions: 296104
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)