Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0448
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0324 - 20946774-20946935,20947301-20947780                       71   9e-13
02_04_0361 - 22359278-22359439,22362291-22362728                       71   1e-12
01_06_0783 + 31975261-31975398,31975583-31975726                       66   3e-11
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           66   3e-11
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     56   3e-08
07_03_0941 - 22763733-22763970,22764077-22764213,22764282-227644...    28   6.2  

>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 27/53 (50%), Positives = 40/53 (75%)
 Frame = +1

Query: 169 KDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 327
           + +A  +KKEFDK Y PTWHCIVG ++GS+VTH    F+YF + ++ ++LFK+
Sbjct: 152 RQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVTHARGCFLYFSMDKIIVMLFKT 204


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +1

Query: 169 KDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 327
           K +A  +KKEFD  Y P WHCIVG  FGSYVTH    F+YF + +V +LLF++
Sbjct: 138 KRLALALKKEFDATYGPAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +1

Query: 124 AVDCATXALXKXNIE--KDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYL 297
           A+  A  AL + ++   + IAA IKKEFD  + P W C+VG +FG Y TH    FIYF L
Sbjct: 21  AMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVVGASFGCYFTHSKGSFIYFKL 80

Query: 298 GQVAILLFK 324
           G +  L+FK
Sbjct: 81  GALRFLVFK 89


>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 28/44 (63%), Positives = 32/44 (72%)
 Frame = +1

Query: 118 KNAVDCATXALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNF 249
           + A D A  A  K  +EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 60  QEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = +1

Query: 118 KNAVDCATXALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGS 255
           + A D    A  K  +EKDI  +IK EFDK + PTWHCIVG NFG+
Sbjct: 72  QEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGHNFGT 116


>07_03_0941 -
           22763733-22763970,22764077-22764213,22764282-22764470,
           22765238-22765756,22766319-22767357,22767665-22767759,
           22768253-22768357
          Length = 773

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 105 RSCQHSLCLLCDHTCLSWVL 46
           RS QHSL  L DH CL +VL
Sbjct: 530 RSLQHSLDKLRDHFCLQYVL 549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,625,237
Number of Sequences: 37544
Number of extensions: 239795
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)