Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0448
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               140   7e-34
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   4e-08
SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)                    30   2.1  
SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  140 bits (340), Expect = 7e-34
 Identities = 62/70 (88%), Positives = 66/70 (94%)
 Frame = +1

Query: 121 NAVDCATXALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLG 300
           +A++CAT AL K NIEKDIAAFIKKEFDKKY PTWHCIVGRNFGSYVTHET+HFIYFYLG
Sbjct: 20  DAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG 79

Query: 301 QVAILLFKSG 330
           QVAILLFKSG
Sbjct: 80  QVAILLFKSG 89



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 63  MCDRKAGIKNADMXEXMQQE 122
           M +RKA IKNADM E MQ +
Sbjct: 1   MSERKAVIKNADMAEDMQTD 20


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +1

Query: 133 CATXALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI 312
           C T      N  +  A  IK+  DKK+  +WH +VG  FG  +THE R+ +Y + G+   
Sbjct: 44  CVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGKYTT 103

Query: 313 LL 318
           +L
Sbjct: 104 IL 105


>SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)
          Length = 354

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 184 FIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFY 294
           ++K+E D    PT+  + G  +G     +T+HFIY Y
Sbjct: 42  YVKREGDPLVRPTFP-VAGFTYGIQYAAKTKHFIYVY 77


>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 435 NVPQPEPRMRICKGYPSDNTASAASKKIEVMLNGLT 328
           N P  EP + +  G P DNT  +++ KI V  NG +
Sbjct: 7   NRPVHEP-LAVLSGVPKDNTIPSSAPKISVSKNGFS 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,329
Number of Sequences: 59808
Number of extensions: 288198
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)