Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0448
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   141   4e-34
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    76   3e-14
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    69   2e-12
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    62   4e-10
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    62   4e-10
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    27   9.8  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  141 bits (342), Expect = 4e-34
 Identities = 62/71 (87%), Positives = 67/71 (94%)
 Frame = +1

Query: 118 KNAVDCATXALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYL 297
           ++A+DCAT AL K NIEKDIAA+IKKEFDKKY PTWHCIVGRNFGSYVTHET+HFIYFYL
Sbjct: 19  QDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL 78

Query: 298 GQVAILLFKSG 330
           GQVAILLFKSG
Sbjct: 79  GQVAILLFKSG 89



 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 63  MCDRKAGIKNADMXEXMQQE 122
           M DRKA IKNADM + MQQ+
Sbjct: 1   MVDRKAVIKNADMSDDMQQD 20


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 31/70 (44%), Positives = 46/70 (65%)
 Frame = +1

Query: 118 KNAVDCATXALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYL 297
           + A   A  ++   ++E DIA  +K  FD++Y P WHCI G++FGS+VT E   FIYF +
Sbjct: 71  QEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRI 130

Query: 298 GQVAILLFKS 327
           G +A +LFK+
Sbjct: 131 GTIAFMLFKT 140


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +1

Query: 160 NIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 330
           NI+KD+AAF+K+E DKK+  TWH I G+ FGS V++E  HFI     +V ++++K G
Sbjct: 33  NIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 26/60 (43%), Positives = 43/60 (71%)
 Frame = +1

Query: 145 ALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 324
           AL    IE +IA+F+K++FD KY   W C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 72  ALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 129


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 26/60 (43%), Positives = 43/60 (71%)
 Frame = +1

Query: 145 ALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 324
           AL    IE +IA+F+K++FD KY   W C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 54  ALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 111


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 393 YPSDNTASAASKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKI 244
           Y  D    +   KI  +L  LTA K  +   S V+V EV     HI+  I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,808
Number of Sequences: 27780
Number of extensions: 218396
Number of successful extensions: 477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)