Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0448
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15930.1 68417.m02419 dynein light chain, putative similar to...   114   6e-26
At1g23220.1 68414.m02904 dynein light chain type 1 family protei...    74   1e-13
At5g20110.1 68418.m02394 dynein light chain, putative similar to...    73   1e-13
At4g27360.1 68417.m03927 dynein light chain, putative similar to...    69   2e-12
At3g16120.1 68416.m02036 dynein light chain, putative similar to...    67   9e-12
At1g52250.1 68414.m05895 dynein light chain type 1 family protei...    64   9e-11
At5g35370.1 68418.m04204 lectin protein kinase family protein co...    28   6.8  

>At4g15930.1 68417.m02419 dynein light chain, putative similar to
           dynein light chain 2 [Mus musculus] GI:15545995;
           contains Pfam profile PF01221: Dynein light chain type 1
          Length = 103

 Score =  114 bits (274), Expect = 6e-26
 Identities = 50/71 (70%), Positives = 57/71 (80%)
 Frame = +1

Query: 118 KNAVDCATXALXKXNIEKDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYL 297
           K A++ A  A  K ++EKDIA  IKKEFDKK+  TWHCIVGRNFGSYVTHET HF+YFYL
Sbjct: 33  KEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYL 92

Query: 298 GQVAILLFKSG 330
            Q A+LLFKSG
Sbjct: 93  DQKAVLLFKSG 103


>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 129

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 30/53 (56%), Positives = 39/53 (73%)
 Frame = +1

Query: 169 KDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 327
           K +A  +KK+FD  Y P WHCIVG +FGSYVTH T  F+YF + +V +LLFK+
Sbjct: 69  KRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121


>At5g20110.1 68418.m02394 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 209

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = +1

Query: 169 KDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 327
           K +A  +KKEFDK Y P WHCIVG +FGS+VTH T  FIYF + ++ +LLFK+
Sbjct: 149 KHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201


>At4g27360.1 68417.m03927 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 103

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
 Frame = +1

Query: 118 KNAVDCATXALXKXNIEK--DIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYF 291
           ++A+  A+ AL   ++ +   IA FIKKEFD+ Y   W CIVG +FGS+VTH +  FI+F
Sbjct: 19  EDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTHCSGCFIHF 78

Query: 292 YLGQVAILLFK 324
            +G + ILLFK
Sbjct: 79  SVGSLTILLFK 89


>At3g16120.1 68416.m02036 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 93

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +1

Query: 175 IAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 324
           IAA IKKEFD++Y   W C+VG NFG + TH    FIYF+LG +  L+FK
Sbjct: 40  IAAHIKKEFDERYGSGWQCVVGTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89


>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 94

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 28/56 (50%), Positives = 34/56 (60%)
 Frame = +1

Query: 169 KDIAAFIKKEFDKKYXPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG*T 336
           K IA  IKKEFD++Y   W C+VG NFG + TH    FIYF L  +  L+FK   T
Sbjct: 38  KSIAGHIKKEFDERYGSGWQCVVGSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93


>At5g35370.1 68418.m04204 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 870

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 329 PLLKSSIATCPR*K*MKWRVSCVTYEPKLRPTMQCQVGXY 210
           P L+  + +    K ++  + CV  EP LRPTM   VG +
Sbjct: 762 PRLEGRVTSQEAEKLVRIALCCVHEEPALRPTMAAVVGMF 801


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,781,937
Number of Sequences: 28952
Number of extensions: 192168
Number of successful extensions: 438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)