Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0446
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884     28   8.2  
02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373...    28   8.2  

>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
          Length = 271

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 44  RPTNEALARRGRHGTTVAYIVDDSGS 121
           RP+  A  RR RHGT VAY+  +  S
Sbjct: 22  RPSPSAPNRRRRHGTVVAYMEPNPNS 47


>02_04_0350 +
           22234632-22235145,22235277-22236209,22237253-22237340,
           22237859-22237865
          Length = 513

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 88  GSVTTTPRQSLVCWSAGCAACRRGWXWI 5
           GS+TT     LV ++ G A C  G+ WI
Sbjct: 305 GSITTMSNDELVEFAWGLANCGHGFLWI 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,833
Number of Sequences: 37544
Number of extensions: 292642
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)