Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0445
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 107 1e-23
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 96 2e-20
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 87 1e-17
09_02_0115 + 4413714-4414475 32 0.56
03_04_0095 + 17266595-17266741,17267235-17267807 30 2.3
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 29 3.9
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 3.9
12_02_0312 + 17395716-17398112 29 5.2
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 5.2
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 29 5.2
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 6.9
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 6.9
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 107 bits (256), Expect = 1e-23
Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 11/192 (5%)
Frame = +1
Query: 79 FNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDE 258
FNIEK +LV+ ++ KI I+ S LN +R+KVL+ ++D V ++ ++
Sbjct: 36 FNIEKLQLVEAEKKKIRQEYERKEKQVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKED 95
Query: 259 ARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKN 438
A K+L V + Y LL L+VQ L +L EP V +R R+ D VES+L A+ +Y +
Sbjct: 96 ATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYAS 155
Query: 439 KIK-KDVVLKVDTENFLSPDT---------C-GGIELVAARGRIKISNTLESRLELIAQQ 585
K + + VD + +L P C GG+ L + G+I NTL++RLE++ ++
Sbjct: 156 KAEVHHPEILVDHDVYLPPSPSSHDSHERFCSGGVVLASRDGKIVCENTLDARLEVVFRK 215
Query: 586 LLPEIRNALFGR 621
LPEIR LFG+
Sbjct: 216 KLPEIRKLLFGQ 227
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 96.3 bits (229), Expect = 2e-20
Identities = 67/203 (33%), Positives = 107/203 (52%), Gaps = 22/203 (10%)
Frame = +1
Query: 79 FNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDE 258
FNIEK +LV+ ++ +I I+ S LN AR+KVL+ ++ V + ++
Sbjct: 36 FNIEKLQLVESEKRRIRQDYERKAKQVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKED 95
Query: 259 ARKRLAEVPKDTKLYSELLVTLIV-----------QALFQLMEPTVTIRVRQTDKALVES 405
A K L V KD Y ++L LIV Q+L +L EP+V +R R+ D+ VES
Sbjct: 96 AGKSLLRVTKDATAYRKVLKGLIVQRKDSEIIDQIQSLLRLREPSVVLRCREADRGHVES 155
Query: 406 LLGKAQTDYKNKIKKDV-VLKVDTENFLSPDT---------C-GGIELVAARGRIKISNT 552
+L A+ +Y K K ++ + +D + +L P C GG+ + + G+I NT
Sbjct: 156 VLEAAKKEYAEKAKVNLPKILIDGKVYLPPPKTARDAHGPFCSGGVVIASQDGKIVCDNT 215
Query: 553 LESRLELIAQQLLPEIRNALFGR 621
L++R+E+ +Q LPEIR LF +
Sbjct: 216 LDARVEISFKQKLPEIRKKLFSQ 238
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 87.0 bits (206), Expect = 1e-17
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 21/194 (10%)
Frame = +1
Query: 79 FNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDE 258
F IEK +LV+ ++ +I I+ S LN +RL+VL+ ++D ++L+
Sbjct: 37 FQIEKLQLVEAEKKRIRLEFERNEKQGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEA 96
Query: 259 ARKRLAEVPKDTKLYSELLVTLIVQ----------ALFQLMEPTVTIRVRQTDKALVESL 408
A K L + +D +Y LL IVQ +L +L EP V +R R+ D+ LVES+
Sbjct: 97 AGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESV 156
Query: 409 LGKAQTDYKNK---------IKKDVVLKVDTENFLS--PDTCGGIELVAARGRIKISNTL 555
L A+ +Y +K + ++V L ++ + P GG+ L + G+I NTL
Sbjct: 157 LESAKNEYADKANIYPPEIMVDRNVYLPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTL 216
Query: 556 ESRLELIAQQLLPE 597
++RLE++ ++ LPE
Sbjct: 217 DARLEVVFRKKLPE 230
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 303 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 401
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Frame = +3
Query: 327 CAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLQE*DQEGCCVE-----SRHRELFVA 491
C G + HG H R ++ GV P + + + C + R RE
Sbjct: 150 CVG-VRLHGRRHPHRREAHGGSGSGVFIGGGPREVAQGETSSCARQHLLDGQRRRE--PK 206
Query: 492 RHLWWNRAG-CSQG--TYQDQQHSGVSLGADR 578
RHLWW R G +G + +Q S G DR
Sbjct: 207 RHLWWQRGGEVRRGGSGARGRQESAAQQGRDR 238
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 659 SPLN*SVNLRLGLRPKRALRISGSSCWAISSKRDSRVLLILIRPLAATSSI--PPQVSGD 486
S +N S + G+ + I S C A+ SK D +LIL P+A + ++ P ++ G
Sbjct: 321 SAVNGSSHEGNGMNDNSKILIDNSCCLALYSKLDEDQVLILQSPVALSKAVKNPVELDGL 380
Query: 485 KK 480
+K
Sbjct: 381 RK 382
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 202 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 336
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 175 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 318
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 321 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 422
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 576 DQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLI 436
++L+ + DL GC+ DS G+G Q L + QH + ++
Sbjct: 110 EELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESIL 156
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 342 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 431
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 321 TYCAGSLPAHGTHCHHPRPSNRQGSGG 401
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,659,005
Number of Sequences: 37544
Number of extensions: 398743
Number of successful extensions: 1276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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