Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0445
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 51 1e-08
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 32 0.57
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8) 30 2.3
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40) 29 4.0
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 28 7.0
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0) 28 9.3
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
Length = 288
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +1
Query: 220 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 399
K E + +LDEA +RL +V +D Y +++ LI Q L+QL+E V IR R+ D +LV
Sbjct: 68 KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127
Query: 400 E 402
+
Sbjct: 128 K 128
Score = 41.1 bits (92), Expect(2) = 1e-08
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 502 GGIELVAARGRIKISNTLESRLELIAQQ 585
GGIEL A +G+IK+ NTLESRLE++ +Q
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQ 261
Score = 35.9 bits (79), Expect(2) = 1e-08
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 403 SLLGKAQTDYKNKIKKDVVLKVDTENFLSPD 495
++ G A +YK + KK++ L VD +NFL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203
>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
Length = 739
Score = 31.9 bits (69), Expect = 0.57
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 205 RLKVLKVREDHVRNVLDEARKRLAEV 282
R+ LK +ED ++N+LDE R + EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172
>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1215
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 427 DYKNKI-KKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLES 561
DY N+I D+V++ D N L PD+ G IEL R + SN ++S
Sbjct: 47 DYGNRIIGLDLVVRNDDGNILDPDSTGVIELY--RRHLSTSNKIQS 90
>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
Length = 214
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -3
Query: 250 VHYVRDLHELSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 92
++Y++D H P + E G A + + S S A P F SIP D + +DGP
Sbjct: 19 LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAKPEFFSIPFLDDGSLSEDGP 76
>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
Length = 514
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 232 DHVRNVLDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 408
D V L+E R E+ T +L L+ FQL + + +RQTD L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223
Query: 409 LGKAQTDYK 435
K Q D K
Sbjct: 224 AKKVQGDVK 232
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 208 LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 318
LK+LK R H RN EA+++ E ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 199 QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 309
QA L+ + +D+++ D +KRLA++ + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495
>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
Length = 816
Score = 27.9 bits (59), Expect = 9.3
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Frame = +1
Query: 175 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELL--VTLIVQALFQL 348
IQ+ LNQ+R++ + ++ED V N + ++P D E+L ++ +L+Q
Sbjct: 378 IQAQFTLNQSRIEEITMKEDLVVNHHLLGDEGFGDIPFDQDGEKEILREGEVMEDSLYQS 437
Query: 349 MEPTVTIRVRQTDKALVESLLGKAQTDYK-NKIKKDVVLKVDTENFLSP---DTCGGIEL 516
+ + +K + +S +++ D ++ +D D +FL+ D GG L
Sbjct: 438 KDLSKITLDETENKGISDSTFERSKIDIALDEPIRDDGFGGDGVDFLADGFGDGFGGDAL 497
Query: 517 VAARGRIKISNTLESRLELIAQQLLPEI 600
V + + E LE Q+ +PEI
Sbjct: 498 VPGIDDLPTAAVDELGLEEALQEPVPEI 525
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 250 LDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQT 426
L+E R E+ T +L L+ FQL + + +RQTD L E L K Q
Sbjct: 5016 LEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQLAKKVQG 5075
Query: 427 DYK 435
D K
Sbjct: 5076 DVK 5078
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,732,105
Number of Sequences: 59808
Number of extensions: 418270
Number of successful extensions: 1276
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -