Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0445
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 112 2e-25
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 101 4e-22
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 100 1e-21
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 31 1.1
At5g26680.1 68418.m03171 endonuclease, putative similar to Swiss... 29 2.5
At5g55600.1 68418.m06932 agenet domain-containing protein / brom... 28 5.8
At5g55540.1 68418.m06919 expressed protein 28 5.8
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 28 7.6
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 28 7.6
At2g41990.1 68415.m05194 expressed protein 28 7.6
At2g02180.1 68415.m00154 tobamovirus multiplication protein 3 (T... 28 7.6
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 112 bits (270), Expect = 2e-25
Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 11/192 (5%)
Frame = +1
Query: 79 FNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDE 258
FNIEK +LV+ ++ KI I S LN +R+KVL+ ++D V + D+
Sbjct: 36 FNIEKLQLVEAEKKKIRQDYEKKEKQADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQ 95
Query: 259 ARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKN 438
A K L V +D Y +LL LIVQ L +L EP+V +R R+ D LVE++L A+ +Y
Sbjct: 96 AAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAG 155
Query: 439 KIKKDV-VLKVDTENFLSPDT---------C-GGIELVAARGRIKISNTLESRLELIAQQ 585
K K + VDT+ FL P C GG+ L + G+I NTL++RL++ +
Sbjct: 156 KAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRM 215
Query: 586 LLPEIRNALFGR 621
LP IR +LFG+
Sbjct: 216 KLPVIRKSLFGQ 227
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 101 bits (243), Expect = 4e-22
Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Frame = +1
Query: 79 FNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDE 258
FNIEK +LV+ ++ KI I S LN +R+KVL+ ++D V + +E
Sbjct: 36 FNIEKLQLVEAEKKKIRQEYEKKEKQVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEE 95
Query: 259 ARKRLAEVPKDTKL------YSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKA 420
A K+L +V + Y LL LIVQ L +L EP V +R R+ D +VES+L A
Sbjct: 96 AAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDA 155
Query: 421 QTDYKNKIKKDV-VLKVDTENFLSP----------DTCGGIELVAARGRIKISNTLESRL 567
+Y K K + VD + FL P GG+ L + G+I NTL++RL
Sbjct: 156 SEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTLDARL 215
Query: 568 ELIAQQLLPEIRNALFGR 621
E+ + LPEIR +LFG+
Sbjct: 216 EVAFRNKLPEIRKSLFGK 233
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 100 bits (239), Expect = 1e-21
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 13/193 (6%)
Frame = +1
Query: 79 FNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDE 258
FNIE+ +L++ + K+ I S LN +R+K L+ ++D V + D
Sbjct: 36 FNIERLQLLESAKRKLRQDYDRKLKQVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDS 95
Query: 259 ARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKN 438
A K L V D Y +LL +LI+++L +L EP+V +R R+ DK +VES++ A+ Y
Sbjct: 96 AAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAE 155
Query: 439 KIK-KDVVLKVDTENFL------------SPDTCGGIELVAARGRIKISNTLESRLELIA 579
K K + +D + FL P GG+ L + G+I NTL++RL++
Sbjct: 156 KAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAF 215
Query: 580 QQLLPEIRNALFG 618
+Q LP+IR L G
Sbjct: 216 RQKLPQIRTRLVG 228
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 285 KGHQTVLRAAGHTYC-AGSLPAHGTHCHHPRPSNRQGSGGVPARKSPN 425
+GH+ V + +C G+ G+ C +P G+G PAR + N
Sbjct: 1613 RGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYNGNGSAPARGTNN 1660
>At5g26680.1 68418.m03171 endonuclease, putative similar to
Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor
1) (MF1) [Homo sapiens]
Length = 453
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 576 DQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQH 457
++LQ + DL GC+ DS G+G Q L + QH
Sbjct: 215 EELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
>At5g55600.1 68418.m06932 agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein
contains Pfam profile PF01426: BAH domain and PF05641:
Agenet domain
Length = 663
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +1
Query: 355 PTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIELVAARGR 534
P + + SLLG+ +NK KDVV+K D EN LS + + +
Sbjct: 568 PNIVEEAEPEGEKAYNSLLGE-----QNKEHKDVVVKEDDENKLSKEEDKEVGSNETKTY 622
Query: 535 IKISNTLESRLE 570
+ NT+E E
Sbjct: 623 VNHENTVEDHKE 634
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 256 RQVHYVRDL-HELSVPSDELGSACSKIGSSSEVQPASPSFHSI 131
R+ H + +L EL VP+DE A + + ++E++ PSF I
Sbjct: 1084 RRYHDLHNLAQELQVPTDENPEADNHVPVTNELEKVDPSFGGI 1126
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 208 LKVLKVREDHVRNVLDEARKRLAEV 282
LK +KV+ED N+LDE ++ L+EV
Sbjct: 54 LKRIKVQEDRGLNLLDEVQQWLSEV 78
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 462 QHNILLDLILVVCLGFSE--QGLHQSLVGLTDADGD 361
QH L D++ V CL F E LH+ G TD D
Sbjct: 558 QHGSLKDVVAVDCLDFCEVKVNLHEFFTGYTDGRYD 593
>At2g41990.1 68415.m05194 expressed protein
Length = 297
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 283 ALQPGACELRQVHYVRDLHELSVPSDELGSACSKIGSSS--EVQPASPSFHS 134
AL P +R ++YV+ V GS CS +GS + SP HS
Sbjct: 16 ALSPPRSAIRPLYYVQSPSNHDVEKMSFGSGCSLMGSPTHPHYYHCSPIHHS 67
>At2g02180.1 68415.m00154 tobamovirus multiplication protein 3
(TOM3) identical to tobamovirus multiplication protein
(TOM3) GI:15425641 from [Arabidopsis thaliana]
Length = 303
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -1
Query: 288 LWHFSQALASFVKYITYVIFTNFQYLQTSLVQHV 187
++HF + + V+ + +V N Q++Q ++QH+
Sbjct: 85 VFHFLNFVVNGVRAVVFVFRRNVQFMQPEILQHI 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,306
Number of Sequences: 28952
Number of extensions: 291086
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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