Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0444
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    30   0.99 
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    30   0.99 
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101...    27   7.0  
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695...    27   9.2  
03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477     27   9.2  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 183 FISRMNPYSPELNYFLSYQYCR 248
           FI R+  +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 444 PVSAGS*KSRXXPAGCSSPKPC 379
           P S  S  SR  P GCS+P PC
Sbjct: 287 PPSPSSGSSRTTPGGCSTPTPC 308


>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
            24510294-24510362,24510428-24510502,24510584-24510688,
            24511309-24511407,24511521-24513230,24513489-24513788,
            24514748-24514846,24514962-24515079,24515166-24515251,
            24515334-24515402,24515746-24515843,24516373-24516534,
            24516779-24516787,24516970-24516991,24517620-24517712,
            24517872-24517940,24518720-24518782,24518882-24519037,
            24520895-24521230
          Length = 1355

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 23   LRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNNNDTTGWRSVF 184
            +++T      P+ P+LI Q + + ++ S   R   Q   ++  NND + W   F
Sbjct: 1112 VKITPHTSNGPSIPQLIHQISNVSEVTSLDKREALQQLVTASTNNDNSIWTKYF 1165


>10_03_0007 -
           6956215-6956223,6957082-6957300,6957874-6957978,
           6958062-6958175,6958342-6958467,6958583-6958697,
           6958791-6958867,6958956-6959179,6959848-6959953,
           6960065-6960163,6960282-6960467,6960611-6960613
          Length = 460

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 269 CQLKT**SAVLIGQEIVELWAVRIHPRDKILNAIQLYRCYSLSCGWAEGSCEQHE 105
           CQL       L  +EI +LW+   H  D I++  +  RC      W+   C Q E
Sbjct: 349 CQLGMVHPDRLNSEEIKDLWSEADHDGDDIVDYKEFQRCI-----WSPTCCSQEE 398


>03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477
          Length = 486

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 174 VQYFISRMNPYSPELNYFLSYQYCRSLSLQLASFE 278
           + +  +  +P+  ELN F S+Q+ ++LSL    F+
Sbjct: 196 LSFLANHSSPFMVELNPFSSFQHKKNLSLDYYLFQ 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,256
Number of Sequences: 37544
Number of extensions: 175016
Number of successful extensions: 351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)