Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0444
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-4|CAB54450.1|  474|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p...    27   8.3  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    27   8.3  
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p...    27   8.3  
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class I...    27   8.3  
AY390540-1|AAQ94952.1|  405|Caenorhabditis elegans SMA-9 class I...    27   8.3  
AY390539-1|AAQ94951.1|  465|Caenorhabditis elegans SMA-9 class I...    27   8.3  
AY390538-1|AAQ94950.1|  591|Caenorhabditis elegans SMA-9 class I...    27   8.3  

>AL110490-4|CAB54450.1|  474|Caenorhabditis elegans Hypothetical
           protein Y48B6A.4 protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 98  IMSRAARSFPQPSRSSKNNNDTTGWRSVFYL*DESVQPRAQL 223
           +MSR   +F +P R  + N++  G      L ++  QPR +L
Sbjct: 348 LMSRPEHTFCRPRREEEKNDEEAGGDGTKLLENQQHQPRPRL 389


>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
            protein T05A10.1a protein.
          Length = 2066

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 20   LLRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNN 154
            +LR++ +  +LP + +L R  + L    SR+  S   P  SS  N
Sbjct: 1820 ILRISEIPSSLPVNHQLHRDLSFLAHTTSRSESSITSPIVSSSTN 1864


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
            protein T05A10.1e protein.
          Length = 2101

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 20   LLRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNN 154
            +LR++ +  +LP + +L R  + L    SR+  S   P  SS  N
Sbjct: 1855 ILRISEIPSSLPVNHQLHRDLSFLAHTTSRSESSITSPIVSSSTN 1899


>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
            protein T05A10.1d protein.
          Length = 2134

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 20   LLRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNN 154
            +LR++ +  +LP + +L R  + L    SR+  S   P  SS  N
Sbjct: 1888 ILRISEIPSSLPVNHQLHRDLSFLAHTTSRSESSITSPIVSSSTN 1932


>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
            T05A10.1c protein.
          Length = 1692

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 20   LLRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNN 154
            +LR++ +  +LP + +L R  + L    SR+  S   P  SS  N
Sbjct: 1446 ILRISEIPSSLPVNHQLHRDLSFLAHTTSRSESSITSPIVSSSTN 1490


>AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class Ib
           protein.
          Length = 521

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 20  LLRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNN 154
           +LR++ +  +LP + +L R  + L    SR+  S   P  SS  N
Sbjct: 275 ILRISEIPSSLPVNHQLHRDLSFLAHTTSRSESSITSPIVSSSTN 319


>AY390540-1|AAQ94952.1|  405|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 20  LLRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNN 154
           +LR++ +  +LP + +L R  + L    SR+  S   P  SS  N
Sbjct: 159 ILRISEIPSSLPVNHQLHRDLSFLAHTTSRSESSITSPIVSSSTN 203


>AY390539-1|AAQ94951.1|  465|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 20  LLRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNN 154
           +LR++ +  +LP + +L R  + L    SR+  S   P  SS  N
Sbjct: 219 ILRISEIPSSLPVNHQLHRDLSFLAHTTSRSESSITSPIVSSSTN 263


>AY390538-1|AAQ94950.1|  591|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 591

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 20  LLRVTTLIRTLPADPKLIRQYAVLLDIMSRAARSFPQPSRSSKNN 154
           +LR++ +  +LP + +L R  + L    SR+  S   P  SS  N
Sbjct: 345 ILRISEIPSSLPVNHQLHRDLSFLAHTTSRSESSITSPIVSSSTN 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,066,399
Number of Sequences: 27780
Number of extensions: 156309
Number of successful extensions: 377
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)