Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0444
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   2.5  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   2.5  
At2g35550.2 68415.m04355 expressed protein                             27   4.4  
At2g35550.1 68415.m04354 expressed protein                             27   4.4  

>At5g54650.2 68418.m06805 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 68   LIRQYAVLLDIMSRAARSFP-QPSRSSKNNNDTTGWRSVFYL*DESVQPRAQLFPVLSVL 244
            ++R + ++LD   +  R    +P R ++    T    S       S+ PR +LFP ++  
Sbjct: 831  IVRDFLIILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITER 890

Query: 245  QIIKSST 265
            ++ +SS+
Sbjct: 891  RVDQSSS 897


>At5g54650.1 68418.m06804 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 68   LIRQYAVLLDIMSRAARSFP-QPSRSSKNNNDTTGWRSVFYL*DESVQPRAQLFPVLSVL 244
            ++R + ++LD   +  R    +P R ++    T    S       S+ PR +LFP ++  
Sbjct: 831  IVRDFLIILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITER 890

Query: 245  QIIKSST 265
            ++ +SS+
Sbjct: 891  RVDQSSS 897


>At2g35550.2 68415.m04355 expressed protein
          Length = 226

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +2

Query: 98  IMSRAARSFPQPSRSSKNNNDTTGWRSVFYL*DESVQPRAQLFPVLSVLQIIKSSTGIVR 277
           +M   +  FP P R S+N+ +T   +SV     ++++P+ Q     SV    K +  I  
Sbjct: 53  VMVPQSHLFPPPIRDSRNDTETVKQKSVNQSPSKALKPKPQR-KKRSVSNKSKKTPSIPE 111

Query: 278 DERRKQ 295
            +R K+
Sbjct: 112 TKREKK 117


>At2g35550.1 68415.m04354 expressed protein
          Length = 271

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +2

Query: 98  IMSRAARSFPQPSRSSKNNNDTTGWRSVFYL*DESVQPRAQLFPVLSVLQIIKSSTGIVR 277
           +M   +  FP P R S+N+ +T   +SV     ++++P+ Q     SV    K +  I  
Sbjct: 98  VMVPQSHLFPPPIRDSRNDTETVKQKSVNQSPSKALKPKPQR-KKRSVSNKSKKTPSIPE 156

Query: 278 DERRKQ 295
            +R K+
Sbjct: 157 TKREKK 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,446,562
Number of Sequences: 28952
Number of extensions: 141739
Number of successful extensions: 313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)