Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0443
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             314   3e-86
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)            33   0.29 
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)                    29   3.5  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    29   3.5  
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)           29   4.7  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_44630| Best HMM Match : HECT (HMM E-Value=0)                        28   6.2  
SB_56056| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   8.1  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   8.1  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 28   8.1  
SB_5402| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  314 bits (772), Expect = 3e-86
 Identities = 150/171 (87%), Positives = 161/171 (94%)
 Frame = +1

Query: 82  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 261
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 262 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 441
           P+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 442 ILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGXRPGRVKRKNL 594
           +LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GG RPGRVKRKN+
Sbjct: 125 VLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNM 175


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 30/123 (24%), Positives = 61/123 (49%)
 Frame = +1

Query: 139 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 318
           +E+K++ +Y ++ + +  +       I+  A ++  L+ KDP R+     +L +L  +G+
Sbjct: 28  REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRVEATEQILEKLHNMGL 87

Query: 319 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 498
           +  K+  L     +    F  RRL   +    +A+ +  A   I Q H+RV  +V+  P+
Sbjct: 88  ISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146

Query: 499 FIV 507
           F+V
Sbjct: 147 FLV 149


>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
          Length = 738

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
 Frame = +1

Query: 214 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRI-GVLDEKQMKLDYVLGLKIEDFLERRL 390
           R R+  RE L    +D +R       +RRL +I   L +++++   +L  +I   L +R+
Sbjct: 246 RKRRRQRERLLRRRRDRQRRLRQRRRMRRLRKIIDNLRKREIRRKVILRRRINR-LNKRM 304

Query: 391 QTQVF----KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 558
           +  +     K G A+  ++ R+ I +R I + ++         RLD   +    LK+   
Sbjct: 305 RIYINRMRRKHGKARRQYNIRVRILRRQITILRKNKTAKRLRQRLDKVMNHVRRLKNRLA 364

Query: 559 GXRPGRVKRKNL 594
             R  R++RK L
Sbjct: 365 RQRRERLRRKRL 376


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 109 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 267
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
          Length = 499

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = -3

Query: 373 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRG*GAHEQPYGYERACI*R 194
           SP+ +D  H  VSSV    LQ   DD   H L+  ++ PS     +++  +  +     +
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPSE----SNKTEFITKATERLK 273

Query: 193 AILHACCGDRTLR 155
            ++H+C G + +R
Sbjct: 274 TLVHSCSGKKAIR 286


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 540  SEISIRWXSSWTCQEEEPPQGTRVAEPPMM 629
            S  ++ +   W C  +E  +G+R A PPM+
Sbjct: 1111 SSATVEYFKQWLCYRKEAEEGSRDACPPML 1140


>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
          Length = 398

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +1

Query: 217 IRKAARELLTLEEKDPKRL-------FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDF 375
           + K  R   T  EKDPKR+       + G AL   ++ +G+  E   +  Y LGL +E+ 
Sbjct: 100 VGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECD-EAAYQLGLDMEEL 158

Query: 376 LERRLQTQVFKAGLAK 423
            E      +   GL +
Sbjct: 159 EEMEEDAGLGNGGLGR 174


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
 Frame = +1

Query: 169  LRNKREVWRVKYTLARIRKAARELLTLE--EKDPKR--LFEGNA--LLRRLVRIGVL--D 324
            L N  E W  +   AR+R+   +L+ L+  +KD KR  + E  A  L+ R   +     D
Sbjct: 1180 LTNTAEAWTQEQREARLRELKDKLVALDPADKDQKRSVMLEAAAIKLVSRKAHLAKSRED 1239

Query: 325  EKQMKLDYVLGLKIEDF-LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ--VVNIP 495
              ++  D V+   I D   E+  +++   A + +      I +++ HI  R Q  + N+ 
Sbjct: 1240 GSEVPRDEVMISLIADLQQEQDKESEGVLASMQEKDKDGLIALQKEHIAARAQDTLANVR 1299

Query: 496  SFIVRLDSGKHID 534
            + + R + G   D
Sbjct: 1300 AVLTRGEEGVAAD 1312


>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 223 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 342
           ++A ELL   EK+ KRL E NA L    R  V++ +++KL
Sbjct: 24  RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63


>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1003

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -2

Query: 200 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYVFENTDGTLLFTILASSHALLADKN 21
           LTRH+S+   R   P I  S S       RR  +    N+      T+ AS+ A L+D N
Sbjct: 40  LTRHSSQPKLRRDEPSITGSLSNLTLDNSRRAASLAQLNSLKATGKTLSASNLAALSDTN 99


>SB_56056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 632 LHHWRLRHPCPLRRFFLLTRPGRXPP 555
           LH WRL   C    FF   +PG  PP
Sbjct: 30  LHTWRLGQLCVGLEFFHYQKPGYSPP 55


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 490 CSQLACGHEYAFAGSKFWHDGWTSP 416
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 124 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 267
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 301 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 447
           L++I   D+K M+ +Y+LGL +E   +R    +++   + K   H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854


>SB_5402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 632 LHHWRLRHPCPLRRFFLLTRPGRXPP 555
           LH WRL   C    FF   +PG  PP
Sbjct: 30  LHTWRLGQLCVGLEFFHYQKPGYSPP 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,939,465
Number of Sequences: 59808
Number of extensions: 426923
Number of successful extensions: 1129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)