Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0443
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   302   2e-82
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   3.1  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   4.1  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   5.4  
Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  302 bits (741), Expect = 2e-82
 Identities = 143/175 (81%), Positives = 162/175 (92%)
 Frame = +1

Query: 70  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 249
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 250 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 429
           E+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSI
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122

Query: 430 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGXRPGRVKRKNL 594
           HHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GG RPGRVKR+ L
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
 Frame = +1

Query: 178 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 354
           KRE + +  TLA + R+ A  +  L E DP R      +L +    G++      L+ + 
Sbjct: 40  KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98

Query: 355 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 534
            +    F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I 
Sbjct: 99  KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMIT 158

Query: 535 FSLKS 549
           ++  S
Sbjct: 159 WTKAS 163


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 327 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 497
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 490 CSQLACGHEYAFAGSKFWHDG 428
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 493 GCSQLACGHEYAFAGSKFWH 434
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 602 PLRRFFLLTRPGRXPPNGDFREKSMCLPESRRT 504
           P +  F   + G+ P N DF +K +C P  R T
Sbjct: 476 PQKLCFFFRKKGQKPENIDFSKKKLCAPLVRAT 508


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 388 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 254
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical
           protein F31F6.1 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +1

Query: 160 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE---GNALLRRLV-RIGVLDE 327
           E G       +R  + LAR +   R   TL EKD +++F+   G   ++R++ R G LD+
Sbjct: 106 ECGKMKSVSQFRTVFHLARCKLGNRMSPTLIEKDFEKIFQQYFGMLSMQRVLGRTGTLDQ 165

Query: 328 KQMKLDYVLGLKIEDFLERRLQTQV-FKAGLAKSIHHARIL 447
              K  +   +  E+   R L T V    G    + H R+L
Sbjct: 166 LFAKCSFEELMPAENV--RSLGTPVELSGGSVTVLPHRRVL 204


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 104 VTYVFENTDGTLLFTILASSH 42
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +1

Query: 361 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 486
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +1

Query: 361 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 486
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,501,287
Number of Sequences: 27780
Number of extensions: 313917
Number of successful extensions: 936
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)