Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0443
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   273   6e-74
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   272   1e-73
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    45   5e-05
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   1.3  
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa...    29   2.9  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   3.8  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   5.0  
At1g43730.1 68414.m05028 hypothetical protein                          28   5.0  
At5g41310.1 68418.m05020 kinesin motor protein-related                 27   8.8  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   8.8  
At5g28615.1 68418.m03493 hypothetical protein                          27   8.8  
At5g03320.1 68418.m00283 protein kinase, putative similar to ser...    27   8.8  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    27   8.8  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  273 bits (670), Expect = 6e-74
 Identities = 128/178 (71%), Positives = 154/178 (86%)
 Frame = +1

Query: 58  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 237
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 238 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 417
           LLTL+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 418 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGXRPGRVKRKN 591
           AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGG RPGRVKR+N
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  272 bits (668), Expect = 1e-73
 Identities = 125/169 (73%), Positives = 150/169 (88%)
 Frame = +1

Query: 85  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 264
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 265 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 444
           +R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129

Query: 445 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGXRPGRVKRKN 591
           LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGG RPGRVKR+N
Sbjct: 130 LIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 29/123 (23%), Positives = 56/123 (45%)
 Frame = +1

Query: 139 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 318
           +E +I   Y + ++ +  +       ++K    +  ++  DP R+   + LL +L  +GV
Sbjct: 27  RENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGV 86

Query: 319 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 498
           +  ++  L     L +  F  RRL T +     A+    A   I Q H+RV  + +  P+
Sbjct: 87  IPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPA 145

Query: 499 FIV 507
           F+V
Sbjct: 146 FLV 148


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 564 TSTEWRFQREVNVLARVQAHN 502
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 159

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +3

Query: 6   ITSFLILIGEQCVRARQDGEQQSTVGIFKDVRDTSSSF*KGTS*PRVEDHRRV 164
           + SF++L    C+R++  G  ++T  +  D+   ++    G   P +E + R+
Sbjct: 26  LISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRI 78


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 91  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 207
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 330 TDETRLCAWSED*GLLGASSADAGVQSW 413
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 448 SKFWHDGWTSPGQL 407
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 392 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 499
           RRR S  A  S  +   F  G   F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 298 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 399
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 448 SKFWHDGWTSPGQL 407
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


>At5g03320.1 68418.m00283 protein kinase, putative similar to
           serine/threonine-protein kinase NAK [Arabidopsis
           thaliana] SWISS-PROT:P43293
          Length = 420

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 203 YLTRHTSRLLRRPYSPMIFNSWSRRA--FSKGRRGVTYVFENTDGTLLFTILASSHALLA 30
           Y+   +      P SP +  +W  R        RG+TY+ E  D  ++F    SS+ LL 
Sbjct: 166 YMPNQSVEFHLSPRSPTVL-TWDLRLRIAQDAARGLTYLHEEMDFQIIFRDFKSSNILL- 223

Query: 29  DKN 21
           D+N
Sbjct: 224 DEN 226


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 160 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRL 303
           +YG+ NKR V  + +T   +R    E+L ++     +  E N ++ RL
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRL 646


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,664,207
Number of Sequences: 28952
Number of extensions: 291813
Number of successful extensions: 855
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)