Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0442
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   4.6  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   4.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.0  

>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 537 P*CHPAQCNMPETF 496
           P C P QC +P+ F
Sbjct: 160 PDCDPTQCVLPDCF 173


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 99  RXIYVSIFNSSVHXAIHTAEDRQ 31
           R +Y SIF   VH A+ +  +R+
Sbjct: 82  REVYESIFKVEVHEALMSRGERR 104


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 99  RXIYVSIFNSSVHXAIHTAEDRQ 31
           R +Y SIF   VH A+ +  +R+
Sbjct: 242 REVYESIFKVEVHEALMSRGERR 264


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 99  RXIYVSIFNSSVHXAIHTAEDRQ 31
           R +Y SIF   VH A+ +  +R+
Sbjct: 242 REVYESIFKVEVHEALMSRGERR 264


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 477 KLGWCVEMFQAYCIVLDDIMDGSSVRR 557
           +L  C+E    Y  +LD   DG SVR+
Sbjct: 502 RLFTCMECPNNYPWILDPTGDGFSVRK 528


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 420 YKTIEKPEKVTEHTLKMACK 479
           Y+ ++KP+K+T+ ++    K
Sbjct: 292 YQEVKKPKKITDFSISAIMK 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,393
Number of Sequences: 336
Number of extensions: 3780
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)