Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0442
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 93 3e-20
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 58 2e-09
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 29 0.71
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 28 1.6
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.6
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 2.2
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 3.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 6.6
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 25 8.7
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 93.5 bits (222), Expect = 3e-20
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Frame = +3
Query: 243 LEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRXITTVIX 419
+ ++++ F+ LP + + N K +P + +W K L +N +GGK+ R ++ +
Sbjct: 1 MSAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDS 60
Query: 420 YKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGIT 599
Y+ + + E A LGW VE+ Q++ ++ DDIMD S RRG PCWY P VG
Sbjct: 61 YEIL-LGHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-N 118
Query: 600 CXFNDSLXIHSXLXEFLKTNXXDQS 674
ND+ + S + LK + +S
Sbjct: 119 IAINDAFMVESAIYFLLKKHFRQES 143
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 57.6 bits (133), Expect = 2e-09
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Frame = +3
Query: 261 KKMFDDLLPEVIMTLQN-KSKLSEVPQIGDWLKKMLHYNLVGGKHTRXITTVIXYKTIEK 437
KK D P V+ ++ + P+ + L + N +GGK+ R + + ++
Sbjct: 12 KKRLLDFFPVVLEGIREILESMQYFPEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLIN 71
Query: 438 PEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCXFNDS 617
E + E + A LGW +E+ Q ++ DDIMD S RRG+ CWY VG+ N+S
Sbjct: 72 RE-LEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINES 128
Query: 618 LXIHSXL 638
+ + +
Sbjct: 129 QLLEACI 135
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 617 RVVKGACDAHFRTPIPTGHAASDA*TIHNVIQHNAICLKHFDTPSQFTSHFQSMF 453
R++ G P+ HA S TI ++I L+ +PS+F + F+S F
Sbjct: 545 RIISGPLGLVHPDPLVASHARSSMQTIESLIHPRFPPLQKHLSPSEFENTFESRF 599
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 207 NNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGG 386
N S+ T + NL+ + KK +LP +TLQ K KL G K LH +++ G
Sbjct: 254 NISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKLE---NRGVKKKTSLHKSVIEG 308
Query: 387 KHTRXI 404
+ + +
Sbjct: 309 EKIKGV 314
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 450 TEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMP 566
T L +L EM ++ DD++D ++VRRG P
Sbjct: 112 TGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSP 150
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -2
Query: 296 NYFREEIVEHF---LFINYFEIF*GCRHXCAIILISDQLWPIFVCNF 165
N F ++++E+F + ++YF IF H C+ S +W +C+F
Sbjct: 504 NSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 262 FSLIISRFF-EAVVIXALLFLYLISCGQYLYV 170
FSL+IS FF +++I A+L L + SC YL++
Sbjct: 171 FSLVISWFFTHSIIISAVLPLAISSC-MYLWM 201
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 95 PYTFLFSTVQSTXLSTQPRIGS 30
PY FL ST+Q +S P IGS
Sbjct: 507 PYPFLSSTLQPLYVSLGPSIGS 528
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 320 LGFVL*CHNYFREEIVEHFLFINYFEIF*GCRHXCAIILISDQLWP 183
LGF + H+Y HF+ ++ +F CR +L S L P
Sbjct: 97 LGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVP 142
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -2
Query: 593 AHFRTPIPTGHAASDA*TIHNVIQH--NAICLKHFDTPSQFTSHFQSMFGDFFRFFNCFV 420
A+ R P+ S A I N+I + N ++ F+ +S+ +S+ + F F + +
Sbjct: 290 AYKRNPMRCERICSQARYIMNLIPNALNTASVQWFERTLDDSSNRRSLLPEAFLFTDSVL 349
Query: 419 XNHSSYSSCMFTANQIVMKHLFQPIPYL 336
+ S M +++ KH+ +P++
Sbjct: 350 KILLNVISGMVIYPKVIQKHIRAELPFM 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,608
Number of Sequences: 5004
Number of extensions: 60029
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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