Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0442
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 100 2e-21
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 87 1e-17
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 67 1e-11
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 41 0.001
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 36 0.026
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991... 28 6.9
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 28 6.9
05_07_0261 + 28764571-28764733,28766039-28766153,28766241-287663... 28 6.9
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/99 (42%), Positives = 63/99 (63%)
Frame = +3
Query: 357 KMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIM 536
KML YN++GGK R I+ + +K ++ + + + +AC LGWC+E QAY +VLDDIM
Sbjct: 70 KMLDYNVLGGKCNRGISVIDSFKMLKGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIM 129
Query: 537 DGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLK 653
D S RRG PCW+R P+VG+ ND + + + + L+
Sbjct: 130 DNSQTRRGQPCWFRVPQVGLIA-VNDGIILRNHISRILQ 167
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/102 (38%), Positives = 58/102 (56%)
Frame = +3
Query: 348 WLKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 527
W+ KM+ YN+ GGK R ++ V Y + + +V + +AC LGWCVE QA +VLD
Sbjct: 99 WVAKMMDYNVPGGKLNRGLSVVDSYMLLRQGTEVDDEDFYLACVLGWCVEWLQASALVLD 158
Query: 528 DIMDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLK 653
DI D + RR CWY+ P VG++ ND + + + +K
Sbjct: 159 DITDNAYTRRDNLCWYKLPTVGMSA-INDGVLLKCHVQAIIK 199
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/102 (37%), Positives = 52/102 (50%)
Frame = +3
Query: 348 WLKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 527
WL+ ML YN++GG+ ++ KP T + GW QAY +VLD
Sbjct: 46 WLESMLDYNVLGGEKN-----MLFRNNATKPNNGT-------LRYGW---QLQAYFLVLD 90
Query: 528 DIMDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLK 653
DIMD S RRG PCW+R P+VG+ ND L + S + +
Sbjct: 91 DIMDNSQTRRGKPCWFRLPKVGLIA-INDGLVLRSQISRIFR 131
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 348 WLKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLG 485
WL +M+ YN+ GGK R ++ + Y +++ +VTE +AC LG
Sbjct: 84 WLAQMIDYNVPGGKLNRGLSVIDSYLLLKQGSEVTEDDFFLACVLG 129
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 348 WLKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLG 485
W+ +ML YN+ GGK R ++ V YK ++ +++ + +A LG
Sbjct: 47 WIDRMLDYNVPGGKCNRGLSVVDSYKLLKGTNVLSQEDMFLASTLG 92
>12_01_0979 -
9914779-9915327,9915409-9915536,9915947-9916050,
9919832-9919946,9921036-9921528
Length = 462
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 381 GGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRG 560
GGK R + + + + E T + +L +EM ++ DD++D S +RRG
Sbjct: 180 GGKRLRPALVFLVSRATAELAGLLELTTEHQ-RLAEIIEMIHTASLIHDDVIDDSGMRRG 238
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 265 FFSLIISRFFEAVVIXALLFLYLI 194
FFSL I +F ++ + AL+F Y+I
Sbjct: 362 FFSLSIRKFLISIAVFALVFFYMI 385
>05_07_0261 +
28764571-28764733,28766039-28766153,28766241-28766344,
28766571-28766698,28766765-28767328
Length = 357
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 381 GGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRG 560
GGK R + + + + E T + +L +EM ++ DD++D S +RRG
Sbjct: 70 GGKRLRPALVFLVSRATAELAGLLELTTEHQ-RLAEIIEMIHTASLIHDDVIDDSGMRRG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,092,968
Number of Sequences: 37544
Number of extensions: 362379
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -