Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0442
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)   112   3e-25
SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score =  112 bits (269), Expect = 3e-25
 Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 3/140 (2%)
 Frame = +3

Query: 264 KMFDDLLPEVIMTLQNKSKLSEVPQIGD---WLKKMLHYNLVGGKHTRXITTVIXYKTIE 434
           K+FDD  P  +  L  + +      IGD   WL+++L YN+ GGK  R ++ +   + + 
Sbjct: 19  KLFDDAFPGFVNDLVQEEENDLA--IGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLI 76

Query: 435 KPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCXFND 614
           + E  T+  L++A  LGWCVE FQA+ +V DDIMD S  RRG PCWYR+PEVG     ND
Sbjct: 77  REEHFTDEHLRVALLLGWCVEWFQAFFLVADDIMDQSMTRRGQPCWYRQPEVG-NIAIND 135

Query: 615 SLXIHSXLXEFLKTNXXDQS 674
            + I   +   LK +   QS
Sbjct: 136 GIMIEQTVFRLLKKHIKHQS 155


>SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +3

Query: 114 LHDIVDMSVFNCLKFTRKVTYKYWPQLIRYKNNSAXMTTASKNL-------EIINEKKMF 272
           +H  +D  +F C+  TRK  ++ +P++      S    + SK          I+N    F
Sbjct: 99  IHSEMDSEMFRCVSSTRKRNFRPYPEIFENALQSGFFLSDSKTYCVDGSIRNILNTLTSF 158

Query: 273 DDLLPEVIM 299
             +LPE+ +
Sbjct: 159 CWILPEITL 167


>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 255 NEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHT 395
           N+ K F  L  EV   +Q+K       Q  DWL+KML  N+  G  T
Sbjct: 10  NKHKSFG-LTAEVNRKIQSKYDTELEMQCRDWLEKMLGENIEWGVET 55


>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1661

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 588 LPDADTNRACRVGRLNHP*CHPAQCNMPET 499
           +PD    RA R GR   P CHPA  N P T
Sbjct: 886 VPDGTIQRA-RTGRGPDPLCHPAFANDPLT 914


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,492,403
Number of Sequences: 59808
Number of extensions: 426423
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)