Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0442
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 103 9e-22
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 102 1e-21
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 102 1e-21
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 102 1e-21
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 102 2e-21
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 97 4e-20
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 76 2e-13
AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1 p... 38 0.039
AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1 p... 38 0.039
AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1 p... 38 0.039
AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1 p... 38 0.039
BC063635-1|AAH63635.1| 306|Homo sapiens PDSS1 protein protein. 30 7.7
BC049211-1|AAH49211.1| 414|Homo sapiens PDSS1 protein protein. 30 7.7
AL390961-9|CAI17280.1| 415|Homo sapiens trans-prenyltransferase... 30 7.7
AB210838-1|BAE48216.1| 415|Homo sapiens subunit 1 of decaprenyl... 30 7.7
AB209763-1|BAD93000.1| 297|Homo sapiens trans-prenyltransferase... 30 7.7
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 103 bits (246), Expect = 9e-22
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Frame = +3
Query: 333 PQIGDW---LKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMF 503
P+IGD LK++L YN +GGK+ R +T V+ ++ + +P K +L+ A +GWCVE+
Sbjct: 36 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 95
Query: 504 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLKTNXXDQ 671
QA+ +V DDIMD S RRG CWY++P VG+ ND+ + + + LK +Q
Sbjct: 96 QAFFLVADDIMDSSLTRRGQTCWYQKPGVGLDA-INDANLLEACIYRLLKLYCREQ 150
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 102 bits (245), Expect = 1e-21
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Frame = +3
Query: 183 WPQLIRYKNNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 353
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 55 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 112
Query: 354 KKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 533
K++L YN +GGK+ R +T V+ ++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 113 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 172
Query: 534 MDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLKTNXXDQ 671
MD S RRG CWY++P VG+ ND+ + + + LK +Q
Sbjct: 173 MDSSLTRRGQICWYQKPGVGLDA-INDANLLEACIYRLLKLYCREQ 217
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 102 bits (245), Expect = 1e-21
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Frame = +3
Query: 183 WPQLIRYKNNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 353
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 354 KKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 533
K++L YN +GGK+ R +T V+ ++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 171
Query: 534 MDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLKTNXXDQ 671
MD S RRG CWY++P VG+ ND+ + + + LK +Q
Sbjct: 172 MDSSLTRRGQICWYQKPGVGLDA-INDANLLEACIYRLLKLYCREQ 216
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 102 bits (245), Expect = 1e-21
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Frame = +3
Query: 183 WPQLIRYKNNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 353
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 354 KKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 533
K++L YN +GGK+ R +T V+ ++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 171
Query: 534 MDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLKTNXXDQ 671
MD S RRG CWY++P VG+ ND+ + + + LK +Q
Sbjct: 172 MDSSLTRRGQICWYQKPGVGLDA-INDANLLEACIYRLLKLYCREQ 216
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 102 bits (244), Expect = 2e-21
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Frame = +3
Query: 333 PQIGDW---LKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMF 503
P+IGD LK++L YN +GGK+ R +T V+ ++ + +P K +L+ A +GWCVE+
Sbjct: 29 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 88
Query: 504 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLKTNXXDQ 671
QA+ +V DDIMD S RRG CWY++P VG+ ND+ + + + LK +Q
Sbjct: 89 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLDA-INDANLLEACIYRLLKLYCREQ 143
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 97.5 bits (232), Expect = 4e-20
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Frame = +3
Query: 333 PQIGDW---LKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMF 503
P+IGD LK++L YN +GGK+ R +T + ++ + P K +L+ A +GWCVE+
Sbjct: 31 PEIGDAIARLKEVLEYNAIGGKYNRRLTVAVAFRELVDPRKQDADSLQRAWTVGWCVELL 90
Query: 504 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLKTNXXDQ 671
QA+ +V DDIMD S RRG CWY++P VG+ +D+ + + + LK +Q
Sbjct: 91 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLDA-IDDANLLEACIYPLLKLYCREQ 145
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 75.8 bits (178), Expect = 2e-13
Identities = 36/116 (31%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Frame = +3
Query: 333 PQIGDW---LKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMF 503
P+ GD LK++L YN +GGK+ R + ++ ++ + +P K+ +L+ A +GW ++
Sbjct: 4 PETGDATARLKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDADSLQWAPTVGWYAQLL 63
Query: 504 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLKTNXXDQ 671
QA+ +V DDIMD S +G WY++ +G+ ND++ + + + LK +Q
Sbjct: 64 QAFFLVADDIMDSSLTCQGQISWYQKLGMGLDA-INDAILLEACIYCLLKLYCREQ 118
>AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.9 bits (84), Expect = 0.039
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 198 RYKNNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 368
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 369 YNLVGGKHTRXITTV-IXYKTI 431
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.9 bits (84), Expect = 0.039
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 198 RYKNNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 368
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 369 YNLVGGKHTRXITTV-IXYKTI 431
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.9 bits (84), Expect = 0.039
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 198 RYKNNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 368
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 369 YNLVGGKHTRXITTV-IXYKTI 431
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.9 bits (84), Expect = 0.039
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 198 RYKNNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 368
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 369 YNLVGGKHTRXITTV-IXYKTI 431
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>BC063635-1|AAH63635.1| 306|Homo sapiens PDSS1 protein protein.
Length = 306
Score = 30.3 bits (65), Expect = 7.7
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 LKKMLHYNLVG-GKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 527
LK+M Y G GK R I + + + H + EM +V D
Sbjct: 121 LKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHD 180
Query: 528 DIMDGSSVRRG 560
D++D +S RRG
Sbjct: 181 DVIDDASSRRG 191
>BC049211-1|AAH49211.1| 414|Homo sapiens PDSS1 protein protein.
Length = 414
Score = 30.3 bits (65), Expect = 7.7
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 LKKMLHYNLVG-GKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 527
LK+M Y G GK R I + + + H + EM +V D
Sbjct: 120 LKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHD 179
Query: 528 DIMDGSSVRRG 560
D++D +S RRG
Sbjct: 180 DVIDDASSRRG 190
>AL390961-9|CAI17280.1| 415|Homo sapiens trans-prenyltransferase
(TPT) protein.
Length = 415
Score = 30.3 bits (65), Expect = 7.7
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 LKKMLHYNLVG-GKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 527
LK+M Y G GK R I + + + H + EM +V D
Sbjct: 121 LKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHD 180
Query: 528 DIMDGSSVRRG 560
D++D +S RRG
Sbjct: 181 DVIDDASSRRG 191
>AB210838-1|BAE48216.1| 415|Homo sapiens subunit 1 of decaprenyl
diphosphate synthase protein.
Length = 415
Score = 30.3 bits (65), Expect = 7.7
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 LKKMLHYNLVG-GKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 527
LK+M Y G GK R I + + + H + EM +V D
Sbjct: 121 LKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHD 180
Query: 528 DIMDGSSVRRG 560
D++D +S RRG
Sbjct: 181 DVIDDASSRRG 191
>AB209763-1|BAD93000.1| 297|Homo sapiens trans-prenyltransferase
variant protein.
Length = 297
Score = 30.3 bits (65), Expect = 7.7
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 LKKMLHYNLVG-GKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 527
LK+M Y G GK R I + + + H + EM +V D
Sbjct: 128 LKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHD 187
Query: 528 DIMDGSSVRRG 560
D++D +S RRG
Sbjct: 188 DVIDDASSRRG 198
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,492,509
Number of Sequences: 237096
Number of extensions: 1976778
Number of successful extensions: 7065
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7065
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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