Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0442
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    66   3e-11
Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    29   2.7  
AF025459-7|AAB70981.1|  132|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine re...    28   6.2  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    28   8.1  
AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical...    28   8.1  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/100 (29%), Positives = 55/100 (55%)
 Frame = +3

Query: 354 KKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 533
           + +    ++GGK++R    V   + ++   +     L+  C+    +E+ Q++ ++ DDI
Sbjct: 42  RNLFDNTVIGGKYSRASLCVDTIRALQPHLRDETQELQAVCEAAATLEIIQSFYLIADDI 101

Query: 534 MDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLK 653
           MD S  RRG PCW+RR  VG++   ND+  + S + + L+
Sbjct: 102 MDNSETRRGKPCWFRREGVGMSA-INDAFIMDSFVEDILR 140


>Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical
           protein F40F9.8 protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 255 NEKKMFDDLLPEVIMTLQNKSKLSEVPQ 338
           N +  FDDLLP V++ +QN+    + P+
Sbjct: 42  NGRVSFDDLLPRVVLAIQNEEWKDDTPK 69


>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 232 AVVIXALLFLYLISCGQYLYVTLRVNLRQLNTLMSTMS*SPMRW 101
           AVVI  +L   LI    +LY+ + +++R+L  L S    +P R+
Sbjct: 196 AVVINQILLHILIFVSGFLYIPIIISVRKLAHLASAQQNNPQRY 239


>AF025459-7|AAB70981.1|  132|Caenorhabditis elegans Hypothetical
           protein H14A12.5 protein.
          Length = 132

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 123 IVDMSVFNCLKFTRKVTYKYWPQLIRYKNNSAXMTTAS-KNLEIINEKKMFDDLLPE 290
           +VD+  FN  +F+ K+T +YW ++ R +N+S      +   L+  N   + D+ LP+
Sbjct: 12  MVDLQTFNT-QFS-KITDRYWREIFRRQNDSHHPDHINVSRLQTANIITVLDENLPQ 66


>AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine
           receptor, class z protein67 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = -3

Query: 316 DLFCSVIITSGRRSSNIFFSLIISRFFEAVVIXALLFLYLISCGQYLYVTLRVNLRQLNT 137
           D+ C V+        +  + LI S FF  +     + L+L +    LY+ + +++R+L+ 
Sbjct: 157 DIICIVLHAVTFFDDSHPYYLIWSVFFITIFYTMHILLFLSAL---LYIPILISIRKLSH 213

Query: 136 LMSTMS*SPMR---W*XHIRFYFQQFS 65
           L S+   +P R   W   I F F+  S
Sbjct: 214 LASSQLNNPQRYIFWQTMILFVFKSMS 240


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 477 KLGWCVEMFQAYCIVLDDIMDGSSVRRG 560
           K+G   EM     +V DD++D ++ RRG
Sbjct: 137 KIGMIAEMIHTASLVHDDVIDEANTRRG 164


>AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical
           protein Y18H1A.9 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/67 (20%), Positives = 29/67 (43%)
 Frame = +3

Query: 252 INEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRXITTVIXYKTI 431
           I    M DD+   ++   + + KL +  ++ DW ++ + +NL        +   +    I
Sbjct: 81  IKHSVMIDDVQKVIVEQKEKRDKLRKQVRLHDWREQKVQFNLAQYHSFADVINYLNSLAI 140

Query: 432 EKPEKVT 452
             PE V+
Sbjct: 141 TYPELVS 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,879,779
Number of Sequences: 27780
Number of extensions: 340376
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)