Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0442
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi...   110   1e-24
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP...   109   1e-24
At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FP...    44   1e-04
At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative ...    30   1.4  
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id...    29   4.4  
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro...    28   7.6  
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro...    28   7.6  

>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
           mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
           diphosphate synthase 1 identical to SP|Q09152 Farnesyl
           pyrophosphate synthetase 1, mitochondrial precursor (FPP
           synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
           1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
           thaliana}
          Length = 384

 Score =  110 bits (264), Expect = 1e-24
 Identities = 57/160 (35%), Positives = 89/160 (55%)
 Frame = +3

Query: 192 LIRYKNNSAXMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHY 371
           L R +  S+ M T  K+  +     +  DLL +      N+S+L        W+ +ML Y
Sbjct: 32  LYRRRIQSSSMETDLKSTFLNVYSVLKSDLLHDPSFEFTNESRL--------WVDRMLDY 83

Query: 372 NLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSV 551
           N+ GGK  R ++ V  +K +++   +TE  + ++C LGWC+E  QAY +VLDDIMD S  
Sbjct: 84  NVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVT 143

Query: 552 RRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLKTNXXDQ 671
           RRG PCW+R P+VG+    ND + + + +   LK +  D+
Sbjct: 144 RRGQPCWFRVPQVGMVA-INDGILLRNHIHRILKKHFRDK 182


>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
           / FPP synthetase 2 / farnesyl diphosphate synthase 2
           identical to SP|Q43315 Farnesyl pyrophosphate synthetase
           2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
           synthetase 2) [Includes: Dimethylallyltransferase (EC
           2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
           {Arabidopsis thaliana}
          Length = 342

 Score =  109 bits (263), Expect = 1e-24
 Identities = 46/102 (45%), Positives = 68/102 (66%)
 Frame = +3

Query: 348 WLKKMLHYNLVGGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 527
           WL++ML YN+ GGK  R ++ V  YK +++ + +TE    ++C LGWC+E  QAY +VLD
Sbjct: 34  WLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLD 93

Query: 528 DIMDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLK 653
           DIMD S  RRG PCW+R+P+VG+    ND + + + +   LK
Sbjct: 94  DIMDNSVTRRGQPCWFRKPKVGMIA-INDGILLRNHIHRILK 134


>At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FPS2)
           / FPP synthetase 2 / farnesyl diphosphate synthase 2
           identical to SP|Q43315 Farnesyl pyrophosphate synthetase
           2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
           synthetase 2) [Includes: Dimethylallyltransferase (EC
           2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
           {Arabidopsis thaliana}
          Length = 247

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 534 MDGSSVRRGMPCWYRRPEVGITCXFNDSLXIHSXLXEFLK 653
           MD S  RRG PCW+R+P+VG+    ND + + + +   LK
Sbjct: 1   MDNSVTRRGQPCWFRKPKVGMIA-INDGILLRNHIHRILK 39


>At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative /
           GPPS, putative / dimethylallyltransferase, putative /
           prenyl transferase, putative similar to GI:11322965;
           Except for first 55 amino acids, 52% identical to Prenyl
           transferase (Cyanophora paradoxa) (gi 99282). Location
           of est 120E9T7 (gb|T43950)
          Length = 417

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 381 GGKHTRXITTVIXYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRG 560
           GGK  R     +  +   +   + E T++   +LG  +EM     ++ DD++D S +RRG
Sbjct: 135 GGKRMRPGLVFLVSRATAELAGLKELTVEHR-RLGEIIEMIHTASLIHDDVLDESDMRRG 193


>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
           identical to solanesyl diphosphate synthase [Arabidopsis
           thaliana] GI:19911233; contains Pfam profile PF00348:
           Polyprenyl synthetase
          Length = 406

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 381 GGKHTRX-ITTVIXYKTIEKP---EKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSS 548
           GGK  R  +  ++ + T E     E  TEH      +L   +EM     ++ DD++D S 
Sbjct: 124 GGKRMRPGLVFLVSHATAELAGLKELTTEHR-----RLAEIIEMIHTASLIHDDVLDESD 178

Query: 549 VRRG 560
           +RRG
Sbjct: 179 MRRG 182


>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
           protein, putative (CEO) contains Pfam domain, PF02825:
           WWE domain; identical to cDNA for ceo protein (ceo gene)
           GI:11044956
          Length = 588

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 273 DDLLPEVIMTLQNKSKLSEVP 335
           DDLL   I TLQN+ K  E+P
Sbjct: 555 DDLLRSTITTLQNQPKSKEIP 575


>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
           protein, putative (CEO) contains Pfam domain, PF02825:
           WWE domain; identical to cDNA for ceo protein (ceo gene)
           GI:11044956
          Length = 589

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 273 DDLLPEVIMTLQNKSKLSEVP 335
           DDLL   I TLQN+ K  E+P
Sbjct: 556 DDLLRSTITTLQNQPKSKEIP 576


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,549
Number of Sequences: 28952
Number of extensions: 308083
Number of successful extensions: 723
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)