Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0440
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   5.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   6.6  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   8.7  

>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +3

Query: 27  KEAFLPVKEEMDWIKEPVKAAATFEDGQRVQATMEALRQSNEDGCWTSVKLLTEPPDPNP 206
           ++ +L  K++ D  +E  K     E  +  +  +   R +N++    + +LLTE   P+P
Sbjct: 37  EKKYLQEKQQKDEQRELKKRKLEEERLKYEEKKLRISRLANKESS-RNEELLTETTTPSP 95

Query: 207 ALSAAVRRTAISL 245
           A+ A+   T +S+
Sbjct: 96  AVKASPASTKLSV 108


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +3

Query: 12   MISALKEAFLPVKEEMDWIKEPVKAAATFEDGQ-------RVQATMEALRQSNED 155
            M++  +  +L  K E+D + + +   A + +GQ         QATM  L Q+ E+
Sbjct: 1073 MVNTFERLYLQFKNELDLVWQNINIIAEYIEGQTSTPSAVSEQATMAMLSQNTEE 1127


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -3

Query: 496 YIICDSKWQVESKFIHEKHVNNLLFTNIKYYGICKE 389
           YI+  + +  + K + + HV+N+L   ++  G+  E
Sbjct: 525 YIVSGNGFNEDRKIVFQPHVSNILIDKLEENGLSME 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,945
Number of Sequences: 5004
Number of extensions: 52320
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)