Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0440
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0588 + 22567820-22570802,22570917-22571269                       33   0.32 
11_02_0143 - 8758198-8758338,8758799-8758906,8759150-8759189,875...    29   5.2  
02_05_0762 + 31562589-31563272                                         29   5.2  
04_04_0705 - 27406405-27406424,27406425-27409260                       28   6.9  
09_03_0102 - 12377512-12377737,12378250-12378374,12378756-123789...    28   9.1  

>06_03_0588 + 22567820-22570802,22570917-22571269
          Length = 1111

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 460 CFQLAILNHK*CKTNITPPMPVLSVFLLSNHLDLSHTW 573
           C QL  LN      + T P+ +  +F LS HLDLSH +
Sbjct: 560 CAQLKTLNLAHNSLHGTIPVHIFKIFSLSEHLDLSHNY 597


>11_02_0143 -
           8758198-8758338,8758799-8758906,8759150-8759189,
           8759396-8759637,8761057-8761281
          Length = 251

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = +3

Query: 9   KMISALKEAFLPVKEEMDWIKEPVKAAATFEDGQRVQATMEALRQSNEDGCWTSVKLLTE 188
           K I A K   +  + +++   + +++A   E+ +R++A        N+D  W S KL+++
Sbjct: 167 KAILAAKTTNVMKEIQVELDAKKLESAVLQEELERLKARENYRHCINDDVLWWSQKLVSD 226

Query: 189 PPDPNPALSA 218
           PP     +S+
Sbjct: 227 PPSVMTTISS 236


>02_05_0762 + 31562589-31563272
          Length = 227

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 150 EDGCWTSVK---LLTEPPDPNPALSAAVRRT 233
           EDGCW +     ++   P P P+L  A+RRT
Sbjct: 71  EDGCWVAYGRRGMMRRLPPPLPSLRGAMRRT 101


>04_04_0705 - 27406405-27406424,27406425-27409260
          Length = 951

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -3

Query: 133 ASIVAWTLCPSSKVAAALTGSFIQSISSLTGKNASLRA 20
           A ++A TL  S+KVAAAL+G     +SSL G  + + A
Sbjct: 2   AEMIAVTL--SAKVAAALSGPAAVRLSSLAGVRSGIEA 37


>09_03_0102 -
           12377512-12377737,12378250-12378374,12378756-12378941,
           12379469-12379609,12379972-12380114,12380515-12380707
          Length = 337

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 21  ALKEAFLPVKEEMDWIKEPVKAAATFEDGQRVQATMEA-LRQSNEDGCWTSVKLLTEP 191
           A+K+  +  KE++D +KE ++ ++ F     +     A +   N+ G W     L  P
Sbjct: 70  AMKKVLIQSKEQLDLVKEEIRVSSLFNHPNLLPLLDHAVIAVKNQQGDWNHEAYLLFP 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,825
Number of Sequences: 37544
Number of extensions: 306016
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)