Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0440
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)          36   0.035
SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)                29   3.0  
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)                      29   5.3  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         28   7.0  

>SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)
          Length = 408

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +3

Query: 72  EPVKAAATFEDGQRVQATMEALRQSNEDGCWTSVKLLTE 188
           + + +AA+FEDG   ++ M+A+  S+  GCW ++  L++
Sbjct: 323 QAIASAASFEDGLYTRSVMDAIITSSRKGCWVNIPPLSK 361


>SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)
          Length = 431

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 143 LSQSLHSCLDSLSIFK-SCCRFNRFFYPVHFFFDGQKCL 30
           ++Q + +   +LS++K SCCR NR      F +  Q CL
Sbjct: 260 MNQDIENLKHTLSVWKVSCCRMNRKLRTKCFHYKPQTCL 298


>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
          Length = 390

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 571 WSTIKSISLKNIKIHLVSFKNL 636
           W  +KS+ LK IK+H ++F N+
Sbjct: 359 WGGLKSVKLKLIKLHELAFSNI 380


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 553 LDLSHTWSTIKSISLKNIKIHLVSFKNLLSRSQSGI 660
           LD SH  S +KSI + +IK+     KNL+S+   G+
Sbjct: 795 LDSSHNPSRVKSIDVASIKV-ANDIKNLISQDLLGV 829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,646,186
Number of Sequences: 59808
Number of extensions: 358479
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)