Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0440
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.57 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   7.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   7.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 236 HIITIVTNLLICHYYVPLYYKIAYLH 313
           H  T   NLL+C+ YV   Y IA+ +
Sbjct: 797 HYPTREDNLLVCNSYVDASYMIAFAY 822


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 258 FVTIVMIWPYVV-LLQIELDLDQVAQSI 178
           FVT + IW YV+ L+ I L   ++  SI
Sbjct: 220 FVTCIFIWAYVIPLIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 258 FVTIVMIWPYVV-LLQIELDLDQVAQSI 178
           FVT + IW YV+ L+ I L   ++  SI
Sbjct: 220 FVTCIFIWAYVIPLIFIILFYSRLLSSI 247


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 334 PYLYINYMQISYLIIQRYIIMAY 266
           P++  NY     LI++RY IM Y
Sbjct: 81  PFMQQNYPYEWQLILRRYKIMKY 103


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
 Frame = +1

Query: 19  VLSKRHFCPSKKKWTGXXXXXXXXXXXXMDKESKQLWRLCDNQMKM---AVGHLLNY 180
           +L  R +CP   KWT               K   +LW L  N+  M    +G  L Y
Sbjct: 467 LLQDREYCPRYIKWTNRERGVFKLVD---SKAVSRLWGLHKNKPDMNYETMGRALRY 520


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 263 LICHYYVPLYYKIAYL 310
           L C+ Y  LYY I Y+
Sbjct: 99  LYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 263 LICHYYVPLYYKIAYL 310
           L C+ Y  LYY I Y+
Sbjct: 99  LYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 263 LICHYYVPLYYKIAYL 310
           L C+ Y  LYY I Y+
Sbjct: 99  LYCNNYRKLYYNINYI 114


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 502 NITPPMPVLSVFLLSNHLDLSHT 570
           + TP   VL+ F   NH D S+T
Sbjct: 464 DFTPRGAVLARFTHLNHADFSYT 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,790
Number of Sequences: 438
Number of extensions: 3604
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)