Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0440
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16450.1 68415.m01884 F-box family protein contains Pfam PF00...    29   2.5  
At3g27490.1 68416.m03437 DC1 domain-containing protein contains ...    28   5.8  
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         28   7.6  
At1g33890.1 68414.m04201 avirulence-responsive protein, putative...    28   7.6  

>At2g16450.1 68415.m01884 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 427

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 236 HIITIVTNLLICHYYVPLYYKIAY 307
           H+     NLLICHYY   Y+ I Y
Sbjct: 98  HVRFSPDNLLICHYYDLKYFSIGY 121


>At3g27490.1 68416.m03437 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 499 FYIICDSKWQVESKFIHEKHVNNLLFTNIK--YYGICKEC 386
           F ++C S   ++  FIHE H ++LL+  ++  ++  C+ C
Sbjct: 474 FDLVCSS---IDVPFIHESHPHHLLYLKLQDGHFKTCQSC 510


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 217 ADRAGFGSGGSVNNLTDVQQPSSFDCRKASIVAWTLCP 104
           A   GF S  S +  +DV++P++   + A+  A +LCP
Sbjct: 5   ASLQGFSSHASSSIYSDVRRPATTPSKMAAFSALSLCP 42


>At1g33890.1 68414.m04201 avirulence-responsive protein, putative /
           avirulence induced gene protein, putative / AIG protein,
           putative similar to SP|P54120 AIG1 protein {Arabidopsis
           thaliana}; contains Pfam profile PF04548: AIG1 family
          Length = 334

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 36  FLPVKEEMDWIKEPVKAAATFEDGQRVQATMEALRQSNED 155
           +L +KEE +W+K+  KA      G+   A M+   Q   D
Sbjct: 215 YLEIKEETEWLKKQKKAVEASNLGEAELAKMKKELQMEHD 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,932,882
Number of Sequences: 28952
Number of extensions: 257963
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)