Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0439
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    27   2.9  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    27   2.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   3.8  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   5.0  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   6.6  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.7  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   8.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   8.7  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 368 FKIYDAFQFYESVEIFYLIIS*FSFR 291
           F+I+D   F+  + ++YL++S F FR
Sbjct: 135 FRIFDVPVFWPILVVYYLVLSFFCFR 160


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 154 VQPAWYSTDVYVGVSVHDVGDTGGRRALVNSVDGEPGVSVLVQTSGDL-VPR 2
           V P W     Y+ +  HDV         VNS  G+ GV+ L++T+  L +PR
Sbjct: 373 VDPVWKVP--YLPLDPHDVNSEYAAIIRVNSQSGKGGVAYLLKTNCGLDLPR 422


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 253 STSHSGVSQIQSSVA---VRCLNILNATDEAWISVDVQPAWYSTDV 125
           +T  SG+ +    +A   + C  +++  +EAWI   V+ A+  TDV
Sbjct: 446 NTGKSGIFEANMYLAEDRILCFELVSKKNEAWILHYVKSAYADTDV 491


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 94  DTGGRRALVNSVDGEPGVSVLVQTSGDL 11
           D   RRA ++  DG  G +V+ +TS  L
Sbjct: 39  DADARRAFISGFDGSAGCAVIGETSAAL 66


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 306 VVFVSMNSNQESLHSCVFRPATAVSRKFNPRWLSVVSTFS 187
           V+F ++NS  ES    VFR  T++ R  + +  +V   F+
Sbjct: 143 VIFNAVNSPDESFRESVFRTITSLPRLLSGQDSAVTPLFT 182


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 50  LSVDGVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGY 166
           L  D  D     + +   M+  +NIY G + + L++ GY
Sbjct: 825 LQRDFTDVDPVRSLMKKTMHGSTNIYFGAVKATLHVFGY 863


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 134 GIPSWLNIHGYPGFIGCIENVETTDS 211
           G+  W+++HG PG     EN   T S
Sbjct: 148 GLKVWIDLHGVPGSQNGFENSGKTGS 173


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 135 PPMYMLESAFMTLEIPVAGALLSTPSTESQACPSS 31
           PP     S   T+ +P+ GA    PST S + P S
Sbjct: 58  PPSSSSPSTTGTVAVPINGANAVYPSTNSVSLPQS 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,886
Number of Sequences: 5004
Number of extensions: 51132
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)