Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0439
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)           38   0.009
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 34   0.11 
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    31   1.00 
SB_59235| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_9877| Best HMM Match : DUF952 (HMM E-Value=1.5)                     30   2.3  
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)          29   5.3  
SB_473| Best HMM Match : Ribosomal_60s (HMM E-Value=0.97)              28   9.3  

>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
          Length = 1071

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 22/57 (38%), Positives = 27/57 (47%)
 Frame = +2

Query: 26  LHEDGHAWLSVDGVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 196
           LH      L +DG  ++    G S V    S +YIGG  S     G P F GCI+NV
Sbjct: 121 LHHGTGICLRLDGKWRNGSIPGPSFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 177



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = +2

Query: 86  TGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 196
           TG S V    S +YIGG  S     G P F GCI+NV
Sbjct: 829 TGPSFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 865


>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1049

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 41   HAWLSVDGVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGY-PGFIGCIENV 196
            H  ++VDG  K   +  +        ++YIGG P  +   G  PGFIGCI N+
Sbjct: 972  HLNMTVDG--KYTTSLDLDGDRRIAGSLYIGGEPGGMREDGSNPGFIGCIRNI 1022


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
 Frame = +2

Query: 32   EDGHAWLSVDGV-DKSAPATGISNVMNADSNIYIGGIPS----------WLNIHGYPGFI 178
            +D    L+VDG+   S  ++G S  ++  + +YIGG+P+             +  YP FI
Sbjct: 1428 KDSVGTLTVDGIYTASGSSSGASTFISMGTGVYIGGLPTDFIITRSDPPAARVGRYP-FI 1486

Query: 179  GCIENVETTDS 211
            GCI++V +  S
Sbjct: 1487 GCIKSVTSQGS 1497


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 5    RHQVAARLHEDGHAWLSVDGVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGY--PGFI 178
            R Q A  + E+G  +   D  + +    G S  +N    + IGG+ + L   G    GF 
Sbjct: 2970 RCQSAQIVEENGRVFEKRDTCEITGRVKGRSVYLNGFGPLQIGGVETDLTFIGITTTGFR 3029

Query: 179  GCIENVETTD 208
            GCI N+  T+
Sbjct: 3030 GCIRNIIDTE 3039


>SB_59235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 95  SNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 196
           S V    S +YIGG  S     G P F GCI+NV
Sbjct: 3   SFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 36


>SB_9877| Best HMM Match : DUF952 (HMM E-Value=1.5)
          Length = 258

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 190 LNATDEAWISVDVQ-PAWYSTDVYVGVSVHDVGDTGGRRA 74
           +NAT+        + P  + TDVY+ V+  D+ D G RRA
Sbjct: 174 INATETRMTGFAPEVPLEFGTDVYIAVNEEDLQDNGRRRA 213


>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 50  LSVDGVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENVE 199
           ++V+G   SA     + V      + IGG         Y GF+GC++NV+
Sbjct: 281 VTVNGKSYSARVPTRAGVFTTSYEVQIGGY----GFSNYAGFVGCLQNVK 326


>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
          Length = 1001

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 86  TGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGL 223
           T ++ VM AD  +YIGG+      HGY         +E  +S+ G+
Sbjct: 12  TIVTVVMAADKPLYIGGLFDLSTKHGYGALPAAEMAIEEINSNAGI 57


>SB_473| Best HMM Match : Ribosomal_60s (HMM E-Value=0.97)
          Length = 757

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 154 VQPAWYSTDVYVGVSVHDVGDTGGRRA 74
           V P    T+VY+ V+  D+ D G RRA
Sbjct: 684 VNPLEVGTEVYIAVNEEDLQDNGRRRA 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,968,169
Number of Sequences: 59808
Number of extensions: 365718
Number of successful extensions: 970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)