Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0439
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    44   9e-05
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    44   9e-05
AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlec...    44   9e-05
Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    31   0.87 
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    31   0.87 
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z75553-6|CAA99951.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z75529-9|CAA99789.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   6.2  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    28   6.2  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   6.2  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   6.2  

>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 83   ATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGR 253
            +TGI  ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+
Sbjct: 3297 STGILAMLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGK 3354

Query: 254  NTQLC 268
            N + C
Sbjct: 3355 NVKPC 3359


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 83   ATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGR 253
            +TGI  ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+
Sbjct: 3297 STGILAMLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGK 3354

Query: 254  NTQLC 268
            N + C
Sbjct: 3355 NVKPC 3359


>AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlecan
            protein.
          Length = 925

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 83   ATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGR 253
            +TGI  ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+
Sbjct: 847  STGILAMLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGK 904

Query: 254  NTQLC 268
            N + C
Sbjct: 905  NVKPC 909


>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 YPWMFNQLGIPPMYMLESAFMTLEIPVAGALLSTPSTESQACPSSC 28
           Y   + QL +P + M ++    +  P+A  L + PST + +CPS+C
Sbjct: 461 YFLQYCQLALPQVAMNQNWRAQINCPLACPLNAHPSTCTSSCPSTC 506


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 YPWMFNQLGIPPMYMLESAFMTLEIPVAGALLSTPSTESQACPSSC 28
           Y   + QL +P + M ++    +  P+A  L + PST + +CPS+C
Sbjct: 473 YFLQYCQLALPQVAMNQNWRAQINCPLACPLNAHPSTCTSSCPSTC 518


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 YPWMFNQLGIPPMYMLESAFMTLEIPVAGALLSTPSTESQACPSSC 28
           Y   + QL +P + M ++    +  P+A  L + PST + +CPS+C
Sbjct: 461 YFLQYCQLALPQVAMNQNWRAQINCPLACPLNAHPSTCTSSCPSTC 506


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 YPWMFNQLGIPPMYMLESAFMTLEIPVAGALLSTPSTESQACPSSC 28
           Y   + QL +P + M ++    +  P+A  L + PST + +CPS+C
Sbjct: 473 YFLQYCQLALPQVAMNQNWRAQINCPLACPLNAHPSTCTSSCPSTC 518


>Z75553-6|CAA99951.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC443.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 89  GISNVMNADSNIYIGGIPSWLN----IHGYPGFIGCIEN 193
           GI +V+NADS +Y+GG+   L     I  YPG    I++
Sbjct: 161 GIRSVINADSTLYMGGMKGALGEPAAISYYPGLFSSIDD 199


>Z75529-9|CAA99789.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC443.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 89  GISNVMNADSNIYIGGIPSWLN----IHGYPGFIGCIEN 193
           GI +V+NADS +Y+GG+   L     I  YPG    I++
Sbjct: 161 GIRSVINADSTLYMGGMKGALGEPAAISYYPGLFSSIDD 199


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 165 IQASSVALRMLRQRTATED*ICETPLWLVETRSYAETPDLSSSKRKLRNN*VKNLYAFIK 344
           IQ+    LR  + ++  E  I +TPL  +ET S   +P   +  R +    V  +  F  
Sbjct: 180 IQSLRQKLRRRKVQSLEEGSIDKTPL--METSSTPPSPQNPNGTRPIPLLLVLIVLFFWM 237

Query: 345 LECIVYFKYY 374
           ++C+ YF Y+
Sbjct: 238 IQCVAYFAYF 247


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 26   LHEDGHAWLSVDGVDK--SAPATGISNVMNADSNIYIGGIPSWLNIH-GYPGFIGCIENV 196
            + E+ H  + +DG  +       G  + M+    +YIGG PS L++        GCI++V
Sbjct: 2985 VREEKHVKIMIDGETEVLEGDVPGKDSEMSVTEFLYIGGTPSGLSVRTTIVPLRGCIKSV 3044

Query: 197  E 199
            +
Sbjct: 3045 K 3045


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 26   LHEDGHAWLSVDGVDK--SAPATGISNVMNADSNIYIGGIPSWLNIH-GYPGFIGCIENV 196
            + E+ H  + +DG  +       G  + M+    +YIGG PS L++        GCI++V
Sbjct: 2985 VREEKHVKIMIDGETEVLEGDVPGKDSEMSVTEFLYIGGTPSGLSVRTTIVPLRGCIKSV 3044

Query: 197  E 199
            +
Sbjct: 3045 K 3045


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 26  LHEDGHAWLSVDGVDK--SAPATGISNVMNADSNIYIGGIPSWLNIH-GYPGFIGCIENV 196
           + E+ H  + +DG  +       G  + M+    +YIGG PS L++        GCI++V
Sbjct: 799 VREEKHVKIMIDGETEVLEGDVPGKDSEMSVTEFLYIGGTPSGLSVRTTIVPLRGCIKSV 858

Query: 197 E 199
           +
Sbjct: 859 K 859


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 26   LHEDGHAWLSVDGVDK--SAPATGISNVMNADSNIYIGGIPSWLNIH-GYPGFIGCIENV 196
            + E+ H  + +DG  +       G  + M+    +YIGG PS L++        GCI++V
Sbjct: 2985 VREEKHVKIMIDGETEVLEGDVPGKDSEMSVTEFLYIGGTPSGLSVRTTIVPLRGCIKSV 3044

Query: 197  E 199
            +
Sbjct: 3045 K 3045


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 26   LHEDGHAWLSVDGVDK--SAPATGISNVMNADSNIYIGGIPSWLNIH-GYPGFIGCIENV 196
            + E+ H  + +DG  +       G  + M+    +YIGG PS L++        GCI++V
Sbjct: 2985 VREEKHVKIMIDGETEVLEGDVPGKDSEMSVTEFLYIGGTPSGLSVRTTIVPLRGCIKSV 3044

Query: 197  E 199
            +
Sbjct: 3045 K 3045


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,953,450
Number of Sequences: 27780
Number of extensions: 284950
Number of successful extensions: 687
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)