Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0439
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26440.1 68417.m03804 WRKY family transcription factor identi...    31   1.1  
At5g52950.1 68418.m06570 expressed protein ; expression supporte...    28   5.8  
At5g66380.1 68418.m08370 mitochondrial substrate carrier family ...    28   7.6  
At4g03060.1 68417.m00414 2-oxoglutarate-dependent dioxygenase, p...    28   7.6  

>At4g26440.1 68417.m03804 WRKY family transcription factor identical
           to WRKY transcription factor 34 (WRKY34) GI:15990591
           from [Arabidopsis thaliana]
          Length = 568

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
 Frame = -1

Query: 330 RDFLLNYFVVFVSMNSNQESLHSCVFRPATAVSRKFNPRWLSVVSTFSMQPMKPGYPWMF 151
           R+F LNY     S+ +  +       R   A    FN  WL+       + +    P   
Sbjct: 32  REFSLNYIKNEDSLQTTFQESSRGALRERIAARSGFNAPWLNTEDILQSKSLTISSP--- 88

Query: 150 NQLGIPPMYMLES-AFMT--LEIPVAGALLSTPSTESQA 43
              G+ P  +LES  F++  L  P  G L S PS +++A
Sbjct: 89  ---GLSPATLLESPVFLSNPLLSPTTGKLSSVPSDKAKA 124


>At5g52950.1 68418.m06570 expressed protein ; expression supported
           by MPSS
          Length = 945

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 168 QASSVALRMLRQRTATED*ICETPLWLVETR 260
           Q    A R   QR+   D +CETP+  +ET+
Sbjct: 885 QQQRTAKRKKEQRSVEYDRVCETPMTTIETK 915


>At5g66380.1 68418.m08370 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 308

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 225 ICETPLWLVETRSYAETP 278
           +C  P+WLV+TR   +TP
Sbjct: 122 LCTNPIWLVKTRLQLQTP 139


>At4g03060.1 68417.m00414 2-oxoglutarate-dependent dioxygenase,
           putative (AOP2) nearly identical to GI:16118891;
           contains Pfam profile PF03171: 2OG-Fe(II) oxygenase
           superfamily domain.  The gene sequence is frameshifted,
           this could be a pseudogene or a sequencing error may
           exist; identical to cDNA AOP2 GI:16118890
          Length = 259

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +2

Query: 11  QVAARLHEDGHAWLSVD-GVDKSAPA-TGISNVMNADSNIYIGG 136
           +V A + +D +A  SV+ GV  +  A TG+++ +N D+N+ +GG
Sbjct: 40  KVNADISDDVNANASVNAGVGANVNADTGVNDNLNVDANVAVGG 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,455
Number of Sequences: 28952
Number of extensions: 251929
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)