Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0438
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0275 - 24084328-24084564,24084660-24084995                       31   1.2  
12_01_0301 - 2280215-2281154,2281271-2281338                           29   4.7  
11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887     28   6.2  
12_01_0466 + 3649500-3649635,3649925-3650520                           28   8.2  
07_03_1302 + 25618621-25620495                                         28   8.2  

>04_04_0275 - 24084328-24084564,24084660-24084995
          Length = 190

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +2

Query: 203 HYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEI-LQSHNDVYFVTMTQVIQWVQNPRT 379
           HY+    P G+     W K+ P  L   +   DE   Q  + +Y+ T  Q     +  R 
Sbjct: 85  HYDPKACPYGVLLDVFWAKHRPTTL---IRQGDEAGTQYRSGIYYYTAEQ----ERVARE 137

Query: 380 VTEAKNFEPWREKCSVEXNPA 442
             EAK  E W+EK   E  PA
Sbjct: 138 SLEAKQ-EEWKEKIVTEILPA 157


>12_01_0301 - 2280215-2281154,2281271-2281338
          Length = 335

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 197 DRHYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQS 316
           D  +E N+A +G++FH     +N  F++AF +  +  LQ+
Sbjct: 167 DASWEHNKACIGIFFHLP-ATHNALFIKAFCHLTESPLQA 205


>11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887
          Length = 372

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 38  PTRSHAVWEMVMNELDRREDPSNDEYLPGCAMVDSCSNI 154
           PTR  ++WE  + E D R     ++      MVD C +I
Sbjct: 177 PTRGMSMWEACLIETDIRIKVQGEDAARDLTMVDGCVDI 215


>12_01_0466 + 3649500-3649635,3649925-3650520
          Length = 243

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 460 LQAHFKGSSRRNHQFTNLFEMPSQLPLVKRPHGRWP 567
           LQ H +   +R    T LFE+  QL L   P G  P
Sbjct: 151 LQLHLRAEPKRGRPGTGLFELGLQLHLWAEPKGDRP 186


>07_03_1302 + 25618621-25620495
          Length = 624

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 445 LGTSFLQAHFKGSSRRNHQFTNLFEMPSQLPLVKRPHGRWPLLXSHDLEPHVLY*LILIW 624
           +G  F++   KG       +T L +   ++   K+ HG   ++    LEP+V+   +LI 
Sbjct: 204 VGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLIN 263

Query: 625 C 627
           C
Sbjct: 264 C 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,025,920
Number of Sequences: 37544
Number of extensions: 436717
Number of successful extensions: 1030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)