Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0438
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                49   3e-06
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       47   1e-05
SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   3e-05
SB_43341| Best HMM Match : N_methyl (HMM E-Value=6.4)                  29   4.8  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    28   6.3  
SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +2

Query: 347 QVIQWVQNPRTVTEAKNFEPWREKCSVEXNPACWVPHSCKLTSKEVPGETINLQTCLRCP 526
           QVI+W++NP+ V  A  F  W   C     P C  P+ C  T+     +   + TC  CP
Sbjct: 465 QVIEWMKNPQDVNGANGFPAW--DCLTRPKPRCTTPNVCHYTTP----QDFYMPTCSDCP 518

Query: 527 VNYPWLNDPTGD 562
            ++P   +P G+
Sbjct: 519 KHFPSPTNPDGE 530


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +2

Query: 314 SHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEXNPACW 448
           S  DVYFVT++Q I+W++ P  + + K F PW  +C     PA W
Sbjct: 818 SQGDVYFVTVSQAIEWIKTPTPLEKIKTFAPW--QCDKPAPPAPW 860


>SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 33/53 (62%)
 Frame = +2

Query: 191 NFDRHYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQ 349
           NF  HY  N+AP GL+ H+AW   +   +EA   ++  ++ S +DV+ +T++Q
Sbjct: 5   NFQYHYHSNKAPFGLHAHSAWFSQSTGHMEALRKFL-TLVASRDDVWVLTVSQ 56


>SB_43341| Best HMM Match : N_methyl (HMM E-Value=6.4)
          Length = 247

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = -3

Query: 413 LSTARSSWLQSRYVGFVPIGSLVSW*RSKRRCGFEGSRLSNTRKLPKIQGCFSTKLHGNK 234
           ++T  S W +S+ +        V+  R    C F  S+ +  + LP I+G FS      +
Sbjct: 20  IATTESIW-KSKVIRLPRESDAVTTKREFAFCAFVSSKTTFPQNLPYIEGVFSDTCFALR 78

Query: 233 VLKVLGSVRNDGQS 192
           +L   GS     +S
Sbjct: 79  LLDTTGSTTQQFKS 92


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 32   SCPTRSHAVWEMVMNELDRREDPSNDEYLPGC 127
            SC T S+ + + ++N +DR   P +D YL  C
Sbjct: 1113 SCLTWSNLISQELLNSIDRTIKPCDDFYLYAC 1144


>SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +2

Query: 341 MTQVIQWV-QNPR---TVTEAKNFEPWREK 418
           + ++ QW+ QNPR    ++  +N+EPW E+
Sbjct: 151 LKEIDQWLNQNPREIVVISFTRNYEPWNER 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,909,985
Number of Sequences: 59808
Number of extensions: 495413
Number of successful extensions: 1293
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)