Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0438
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 80 2e-15
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 51 7e-07
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 51 7e-07
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 51 7e-07
AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical ... 32 0.45
Z48795-2|CAA88726.1| 149|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 29 3.2
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 29 3.2
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 29 3.2
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 28 7.4
Z50005-1|CAA90294.1| 334|Caenorhabditis elegans Hypothetical pr... 27 9.8
U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permeas... 27 9.8
AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion transpo... 27 9.8
AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion transpo... 27 9.8
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 79.8 bits (188), Expect = 2e-15
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 12/191 (6%)
Frame = +2
Query: 23 NLQSCPTRSH-AVWEMVMNELDRREDPSNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFD 199
N SCP S VW + +N+ D + + + T D+ + NF+
Sbjct: 1684 NEASCPKSSFPGVWSVPLNQFYGSYMSQIDSFRRSSMLRAAVDLNNTVDELEEIITRNFE 1743
Query: 200 RHYEQNRAPLGLYFHAAWLK--NNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNP 373
R Y NRAP L +A +L+ + + ++A +++ + + DVY VT+ Q+I W++ P
Sbjct: 1744 RSYSANRAPYVLSLNADFLQLGGHNKGMKAVQKFLNR-MSAQKDVYIVTIKQLIDWMKRP 1802
Query: 374 RTVTEAKNFEPWREK--C----SVEXNPA---CWVPHSCKLTSKEVPGETINLQTCLRCP 526
++E K+ + C S NP+ C +P+ C ++ + + TCL CP
Sbjct: 1803 VPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNKCLYSTPSLSSQEHQFLTCLPCP 1862
Query: 527 VNYPWLNDPTG 559
YPWL +P G
Sbjct: 1863 TMYPWLENPAG 1873
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 51.2 bits (117), Expect = 7e-07
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 3/174 (1%)
Frame = +2
Query: 32 SCPTRSH-AVWEMVMNELDRREDPSNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHY 208
+CPT+SH A+WE+ + + + DS D L NF HY
Sbjct: 208 NCPTQSHKAIWEIPIQNIQANDTRWYKTLTRAMKPFDS------RDSVTKMLQRNFMNHY 261
Query: 209 EQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTE 388
+ N G + L FL +I + DV+ VT +Q+I +++NP +
Sbjct: 262 KTNHN--GAVYA----------LRDFLKFIVQ----KQDVFVVTGSQIIDYMRNPVDLNN 305
Query: 389 AKNFEPWREKCSV--EXNPACWVPHSCKLTSKEVPGETINLQTCLRCPVNYPWL 544
K+ W+ K + E NP C P +C + + + + C CP +YPW+
Sbjct: 306 IKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFAHSFRMCGVCPKSYPWI 358
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 51.2 bits (117), Expect = 7e-07
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 3/174 (1%)
Frame = +2
Query: 32 SCPTRSH-AVWEMVMNELDRREDPSNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHY 208
+CPT+SH A+WE+ + + + DS D L NF HY
Sbjct: 2277 NCPTQSHKAIWEIPIQNIQANDTRWYKTLTRAMKPFDS------RDSVTKMLQRNFMNHY 2330
Query: 209 EQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTE 388
+ N G + L FL +I + DV+ VT +Q+I +++NP +
Sbjct: 2331 KTNHN--GAVYA----------LRDFLKFIVQ----KQDVFVVTGSQIIDYMRNPVDLNN 2374
Query: 389 AKNFEPWREKCSV--EXNPACWVPHSCKLTSKEVPGETINLQTCLRCPVNYPWL 544
K+ W+ K + E NP C P +C + + + + C CP +YPW+
Sbjct: 2375 IKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFAHSFRMCGVCPKSYPWI 2427
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 51.2 bits (117), Expect = 7e-07
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 3/174 (1%)
Frame = +2
Query: 32 SCPTRSH-AVWEMVMNELDRREDPSNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHY 208
+CPT+SH A+WE+ + + + DS D L NF HY
Sbjct: 1149 NCPTQSHKAIWEIPIQNIQANDTRWYKTLTRAMKPFDS------RDSVTKMLQRNFMNHY 1202
Query: 209 EQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTE 388
+ N G + L FL +I + DV+ VT +Q+I +++NP +
Sbjct: 1203 KTNHN--GAVYA----------LRDFLKFIVQ----KQDVFVVTGSQIIDYMRNPVDLNN 1246
Query: 389 AKNFEPWREKCSV--EXNPACWVPHSCKLTSKEVPGETINLQTCLRCPVNYPWL 544
K+ W+ K + E NP C P +C + + + + C CP +YPW+
Sbjct: 1247 IKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFAHSFRMCGVCPKSYPWI 1299
>AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical
protein Y119C1A.1 protein.
Length = 256
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 371 PRTVTEAKNFEPWR-EKCSVEXNPACWVPHSCKLTSKEVPGETINLQTCLRC 523
PR++++ + PW ++CS E N + H C+L S+ I+ C C
Sbjct: 198 PRSISQENSTGPWICDRCSRENNSNSYRCHHCQLPSRRFDPSEIDFCGCEYC 249
>Z48795-2|CAA88726.1| 149|Caenorhabditis elegans Hypothetical
protein R05H5.3 protein.
Length = 149
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 146 SNILTGDQFYNFLNHNFDRHYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHN- 322
S +L G + N + D +GLYF A+W +F + DEI + H
Sbjct: 2 SELLAGTKLINQDSEELDAGEHLKGKVVGLYFSASWCPPCRQFTPKLTRFFDEIRKKHPE 61
Query: 323 -DVYFVT 340
+V FV+
Sbjct: 62 FEVVFVS 68
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 369 THVP*LKPRTSSRGEKSAPSXETLHAGYLIPASSLQRKFPEKPSI 503
TH P L PRT+SR +APS + L + +S +RK ++ S+
Sbjct: 104 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 146
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 369 THVP*LKPRTSSRGEKSAPSXETLHAGYLIPASSLQRKFPEKPSI 503
TH P L PRT+SR +APS + L + +S +RK ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 369 THVP*LKPRTSSRGEKSAPSXETLHAGYLIPASSLQRKFPEKPSI 503
TH P L PRT+SR +APS + L + +S +RK ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 452 PHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDP 553
P +C+ T EV T+ Q + P +YP L DP
Sbjct: 295 PTNCRNTCNEVCAPTVASQPSTQAPQSYPVLLDP 328
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 393 RTSSRGEKSAPSXETLHAGYLIPASSLQRKFPEKPSI 503
+ S+ + S PS E LH+ ++ P ++ + F EKPS+
Sbjct: 2391 KLSTASKDSLPS-EALHSKWVPPQKNIVQLFAEKPSV 2426
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 374 RTVTEAKNFEPWREKCS 424
+ T KNFE W+EKCS
Sbjct: 26 KQATFQKNFESWKEKCS 42
>Z50005-1|CAA90294.1| 334|Caenorhabditis elegans Hypothetical
protein F16H9.2 protein.
Length = 334
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 218 RAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHNDV-YFVTMTQVIQWVQNPRTV 382
R+ L Y A+ +N P L+ + + ++H+D+ + T+ Q Q + P V
Sbjct: 270 RSALFQYCSTAYQRNGPSRFNDLLFLLHVVTKTHDDIKKYFTLFQFFQPTEQPSQV 325
>U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permease
family protein 3 protein.
Length = 782
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 296 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 415
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
>AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion
transporter SULP-3b protein.
Length = 762
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 296 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 415
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
>AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion
transporter SULP-3a protein.
Length = 782
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 296 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 415
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,685
Number of Sequences: 27780
Number of extensions: 371129
Number of successful extensions: 1005
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -