Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0438
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 32 0.42
At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase... 30 1.3
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet... 30 1.7
At3g27710.1 68416.m03460 zinc finger protein-related contains si... 30 1.7
At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138... 30 1.7
At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138... 29 2.2
At1g09000.1 68414.m01004 NPK1-related protein kinase, putative (... 29 3.9
At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase fami... 28 5.2
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ... 28 6.8
At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138... 28 6.8
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 31.9 bits (69), Expect = 0.42
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +2
Query: 398 FEPWREKCSVEXNPACWVP-HS--CKLTSKEV-PGETINLQTCLRCPVNYPWL-NDPTGD 562
+E WR+KC E W+ H+ C K V NL TCL C ++ WL + TG
Sbjct: 260 WELWRKKCFDESETVNWITVHTKPCPKCHKPVEKNGGCNLVTCL-CRQSFCWLCGEATGR 318
Query: 563 GHY*XAMISSPTC 601
H A IS +C
Sbjct: 319 DHT-WARISGHSC 330
>At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase 5 [Lycopersicon
esculentum] GI:2459817; contains Pfam profile PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 397
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +2
Query: 272 FLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTE-AKNF-EPWREKCSVEXNPAC 445
F++ F I I+ T V+ + NP + E AK F + W C VE +
Sbjct: 7 FVQVFSIVITIIMSHFGQFDARTSLNVLSFGANPNGIVESAKAFSDAWDAACGVEDSVVI 66
Query: 446 WVPHSCKLTSKEV 484
+VP L S EV
Sbjct: 67 YVPKGRYLVSGEV 79
>At5g27650.1 68418.m03313 PWWP domain-containing protein hypothetical
protein F22F7.12 - Arabidopsis thaliana, EMBL:AC009606
Length = 1072
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 446 WVPHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDPTGDGH 568
W+ + L +P +NL++CL+ PV+ P + G+G+
Sbjct: 890 WLDQAPPLHQPTLPPPNVNLKSCLKKPVDDPSSSSNNGNGN 930
>At3g27710.1 68416.m03460 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 537
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +2
Query: 407 WREKCSVEXNPACWVPHSCKL---TSKEV-PGETINLQTCLRCPVNYPWL-NDPTGDGH 568
W++KC E W+ + KL SK + + NL TC +C ++ WL TG H
Sbjct: 260 WKKKCEDESETVNWITVNTKLCPKCSKPIQKRDGCNLMTC-KCGQHFCWLCGQATGRDH 317
>At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as ' axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 481
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 442 CRVSFDGALFSPRLEVLG 389
CRV+F G F+PR+E LG
Sbjct: 224 CRVNFQGLRFTPRIEALG 241
>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 499
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 457 MRYPACRVSFDGALFSPRLEVLG 389
+++ CRV+F G F+P+LE LG
Sbjct: 222 LQWLRCRVNFQGLKFTPQLEALG 244
>At1g09000.1 68414.m01004 NPK1-related protein kinase, putative
(ANP1) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 1S GI:2342422
Length = 666
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 313 LKDLVYPIQESFQKFRVVFQPSCME 239
LK L P+ E F + F PSCME
Sbjct: 498 LKKLQTPLYEEFYNSLITFSPSCME 522
>At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase family
protein similar to PABA synthase from Streptomyces
griseus [SP|P32483], Streptomyces pristinaespiralis
[gi:1575336]; contains Pfam profiles PF00425:
chorismate binding enzyme, PF00117: glutamine
amidotransferase class-I, PF04715: Anthranilate synthase
component I, N terminal region
Length = 919
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +2
Query: 95 DPSNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYEQNRAPLGLYFHAAWLKNNPEF 274
D S ++Y+ V SC + + Y +R N PLGLY H + NP
Sbjct: 641 DKSREQYIND---VQSCMKYIKDGESYELCLTTQNRRKIGNADPLGLYLHLR--ERNPAP 695
Query: 275 LEAFL 289
AFL
Sbjct: 696 YAAFL 700
>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
Length = 293
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 311 QSHNDVYFVTMTQVIQWVQN-PRTVTEAKNFEPWREKCSVE 430
Q+ V +V ++ + N PR EAK+F WR+ C E
Sbjct: 171 QNRQSVAYVDRERLQHSINNEPRFSKEAKDFFQWRKSCEEE 211
>At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 508
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 442 CRVSFDGALFSPRLEVLG 389
CRV+F+G F+P++E LG
Sbjct: 243 CRVNFNGLKFTPQIEELG 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,889
Number of Sequences: 28952
Number of extensions: 349112
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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