Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0437
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...   186   4e-48
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    78   1e-15
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    29   0.48 
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    29   0.48 
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    28   1.1  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    28   1.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   1.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.0  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    27   2.6  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   2.6  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.4  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   4.5  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.9  

>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score =  186 bits (452), Expect = 4e-48
 Identities = 92/186 (49%), Positives = 130/186 (69%), Gaps = 5/186 (2%)
 Frame = +2

Query: 17  VVFVLGAPGSGKGTQCSMISKEYD-YVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 193
           V+FVLG PG+GKGTQC  +++++D +VH+SAGD LREE+ RPGS+YG +I+E I++G+IV
Sbjct: 4   VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63

Query: 194 PVEVTCSLLHKAMQK---SGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSRE 364
           P+E+T SLL   M++    G ++FLIDGFPR  D  +G+E+ +       F L+F C +E
Sbjct: 64  PMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAK---FALYFRCGQE 120

Query: 365 ICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLXLVRRINAEEEPDQV 544
              +R + RG   SGRSDDNIES+KKRF TY   +MP++ Y      +  I+AE++PD V
Sbjct: 121 TMLKRLIHRGKT-SGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDPDAV 179

Query: 545 F-DKVK 559
           F D VK
Sbjct: 180 FEDTVK 185


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 29/208 (13%)
 Frame = +2

Query: 20  VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVPV 199
           + ++G PG+GKGTQ   I K+Y   HL+ GD+LR +  R  +E G+  ++ +  G +V  
Sbjct: 6   LILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQ-TELGKEAKKIMDQGGLVSD 64

Query: 200 EVTCSLLHKAMQKSG--KERFLIDGFPRNQDNMDGWERVMSD-KTKLLFVLFFECSREIC 370
           ++   ++   +  +   K  F++DGFPR     +    ++ + K  L  VL  +   E+ 
Sbjct: 65  DIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELL 124

Query: 371 TERCLRRGA-AGSG-------------------------RSDDNIESLKKRFNTYLNDTM 472
             R   R    GSG                         RSDDN ++L+KR  TY   T 
Sbjct: 125 VRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVTGEPLIQRSDDNADALRKRLVTYHEQTT 184

Query: 473 PIINYYDKLXLVRRINAEEEPDQVFDKV 556
           P++ +Y K      ++A ++P+QV++++
Sbjct: 185 PVVEFYKKKGKWAAVDAAQKPEQVWEQI 212


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 11  PQVVFVLGAPGSGKGTQCSMISKEY 85
           P V+ ++G  GSGK T CS ++  Y
Sbjct: 101 PSVIMMVGLQGSGKTTTCSKLALHY 125


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 36/180 (20%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
 Frame = +2

Query: 17  VVFVLGAPGSGKGTQCSMISKEYDYV-----HLSAGDLLREERQRPGSEYGEMI----EE 169
           ++ ++G P +GK    S +S+ Y+++       S GD  REE     S   +      EE
Sbjct: 145 IIILVGIPATGKSYIGSKLSRYYNWLKYNCRFFSVGDKRREEGASTYSMSADFFDIKNEE 204

Query: 170 KIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFF 349
             +  E V +E    LLH  + ++G    L      ++     ++R+  +    +  L  
Sbjct: 205 TFKFRENVALETLEDLLHWMIHENGVIGILDATNSTHERRKHLYDRISKEADIGIMFLES 264

Query: 350 ECSREICTERCLR---RGAAGSGRSDDN-IESLKKRFNTYLNDTMPIINYYDKLXLVRRI 517
            C+ +I  E  ++   +G    G   ++ ++ L++R + Y     P+    ++L  ++ +
Sbjct: 265 LCTDDILFEENIKLKIKGPDYEGYDTESALKDLRERVDLYKKYYEPLDERDEQLPFLQYV 324


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 20  VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLRE 124
           + + G PG+GK T    +++  +  ++  GD+++E
Sbjct: 11  IIICGTPGTGKTTLAEQVAETTELENICIGDVVKE 45


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 17  VVFVLGAPGSGKGTQCSMISKEYD 88
           ++ + G PGSGK T C++++K ++
Sbjct: 31  LIGLAGGPGSGKSTLCAILAKAWN 54


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +2

Query: 110 DLLREERQRPGSEYGEM---IEEKIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRN 280
           ++LR++RQ+  SE  ++   ++EK +     P     ++ +   ++   +    D F R 
Sbjct: 100 EILRQQRQKRKSELTQLSQKVKEKFKKMRKKPARRIVTIANDE-EEEDDQTMDEDAFERK 158

Query: 281 QDNMDGWERVMSDKTKLLFVLFFECSREI 367
               +  ER ++DKT  L   F E S ++
Sbjct: 159 SMQGELKERNLTDKTSTLSTSFGETSPDV 187


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 437 KKRFNTYLNDTMPIINYYDKLXLVRRI-NAEEEPDQVFDKVKVAFD 571
           K++FNTYL + + + NY +   L+ R+    + PD V    +   D
Sbjct: 657 KRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASKRKTVD 702


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 77  KEYDYVHLSAGDLLREERQRPGSEYGEMI 163
           KE DY   SA +  +  ++ PGSE GE++
Sbjct: 56  KEIDYAVKSAKEAFKTWKKVPGSEKGELL 84


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 11  PQVVFVLGAPGSGKGTQCSMISKEYDYVHLS 103
           P +V V+G PG+GK T    + + Y    +S
Sbjct: 74  PVIVAVMGPPGTGKSTLIKSLVRRYSKYTIS 104


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 17  VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDL 115
           V  V+G  GSGK T    +S++  + ++   DL
Sbjct: 16  VFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 197 PELSHRYEFFLQSFLRILNQASGVLLGVNRLHSNGHNHILW 75
           P +  ++  FLQ +L   ++   V+ G N +     NH +W
Sbjct: 238 PNVGRKFRKFLQRYLNFSDRPIKVIAGKNVVGEFSGNHGIW 278


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 400 RQWTKRRQHRELKEKIQHISE*YNADHQLLR*IXSCPQD 516
           + W + ++H+E +E    +++  + D  L+R + SC  D
Sbjct: 55  KTWPRFQEHKEYRESFIRLAKCDSPDAILVRFLASCNND 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,712
Number of Sequences: 5004
Number of extensions: 59747
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)