Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0437
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 125 3e-29
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30) 104 6e-23
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 7e-17
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_19245| Best HMM Match : ADK (HMM E-Value=0) 67 1e-11
SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31) 53 2e-07
SB_4186| Best HMM Match : ADK (HMM E-Value=0.094) 31 0.68
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 125 bits (302), Expect = 3e-29
Identities = 58/106 (54%), Positives = 76/106 (71%)
Frame = +2
Query: 227 AMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICTERCLRRGAAGS 406
AM KS ++FLIDGFPRN+DN+ GWE M+DK + VLFFEC +IC R + RG + S
Sbjct: 1 AMAKSDVQKFLIDGFPRNEDNLQGWESRMNDKVDVKAVLFFECPEDICIGRIMSRGQS-S 59
Query: 407 GRSDDNIESLKKRFNTYLNDTMPIINYYDKLXLVRRINAEEEPDQV 544
GR DDNIESL+KRF+T+ N TMPII +Y + LV+ I+ PD++
Sbjct: 60 GRPDDNIESLRKRFHTHENSTMPIIEHYRRQGLVKPISGAPTPDEI 105
>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
Length = 297
Score = 104 bits (250), Expect = 6e-23
Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 3/149 (2%)
Frame = +2
Query: 14 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 193
++V++LG PG+GKGT C + K+Y+Y HLSAGDLLREE R G+E G+MI E +R G++V
Sbjct: 117 RIVYILGGPGAGKGTICDSVVKKYNYCHLSAGDLLREEVTR-GNERGQMITEMMREGKLV 175
Query: 194 PVEVTCSLLHKAMQK-SGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREIC 370
P E+T LL AM++ FLIDGFPR+ D +E + K L F + E+
Sbjct: 176 PKEITIGLLQDAMREHKDMPGFLIDGFPRDIDQGITFEEQHILRKKAL--NFLSSTAELP 233
Query: 371 TERC--LRRGAAGSGRSDDNIESLKKRFN 451
+C +G +G+ + + + +RFN
Sbjct: 234 PLKCQIWSKGGPATGKK-THCKHVAERFN 261
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 32 GAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 196
G P +GK T C +++ ++Y H+ G L+ +E Q+ ++I + I G VP
Sbjct: 243 GGPATGKKTHCKHVAERFNYTHIMPGTLVAQEAQKDTDRAKQLI-QTISAGNDVP 296
>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 84.6 bits (200), Expect = 7e-17
Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Frame = +2
Query: 203 VTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICTER 379
+ LL AM K FLIDGFPR + +E+ ++ +LL L+FECS + R
Sbjct: 2 IILELLRLAMVKQPNTTGFLIDGFPRELEQGLEFEKELA-LCELL--LYFECSPDTMKAR 58
Query: 380 CLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLXLVRRINAEEEPDQVFDKVK 559
L+RG SGR DDN E++ R T++ TMP+I +Y + V++I+AE PD+VF KV
Sbjct: 59 LLKRGET-SGRVDDNEETILSRLETFITQTMPVIEHYQEEGKVKKISAEGGPDEVFKKVS 117
Query: 560 VAFDEI 577
+E+
Sbjct: 118 RVLEEL 123
Score = 70.5 bits (165), Expect = 1e-12
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Frame = +2
Query: 17 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 196
++F++G PGSGK +++ HLS G LL+EE + ++ G + + I G +V
Sbjct: 136 IMFIVGGPGSGKAELAKRLAESSGRTHLSMGQLLKEEATK-DTDRGREVAQAIAMGTLVS 194
Query: 197 VEVTCSLLHKAMQKSGK--ERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREIC 370
E ++L + + K E +++DGFPR+ + + +SD + V+ ECS E
Sbjct: 195 PEHALNILTEKIVSDEKNLEGYVVDGFPRSHEQAKNFTEKVSDFNR---VVALECSDEE- 250
Query: 371 TERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIIN------------YYDKLXLVRR 514
ER L + G+ N E LK R Y ++T+ +++ Y +V +
Sbjct: 251 MER-LAKEKLGAAL---NEEQLKTRIEVYRDNTIAMLDDIEGGKITKSSPYLPNNLVVIQ 306
Query: 515 INAEEEPDQVFDKVKVAFDEI 577
I+AE PD+ F ++ F+ +
Sbjct: 307 ISAEGGPDEAFKEISRVFEGV 327
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 17 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREE 127
+VF++G PGSGK ++++ H+S G LL+EE
Sbjct: 340 IVFIVGGPGSGKTELAKLLAESSGRTHISMGQLLKEE 376
>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 67.3 bits (157), Expect = 1e-11
Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
Frame = +2
Query: 14 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 193
+V+FV+G PGSGK ++++ H+S G LL+EE + ++ + I G +V
Sbjct: 105 RVIFVIGGPGSGKTELAKLLAESSGRTHISMGQLLKEEATK-DTDRAREVARAIGMGTLV 163
Query: 194 PVEVTCSLLHKAMQKSGKE--RFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREI 367
E +L + + + K +++DG+PR+ + + +SD + V+ ECS E
Sbjct: 164 SPEHALGILSETIVRGEKNLGGYVVDGYPRSHEQAKNFTEKVSDFNR---VVALECSDEE 220
Query: 368 CTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLXLVRRINAEEEPDQVF 547
ER L + G+ N E LK R Y ++T+ +++ ++ +I A + ++VF
Sbjct: 221 -MER-LAKEKLGAAL---NEEQLKTRIEVYRDNTIAMLDDMEEAK-TTKIPAAQTIEEVF 274
Query: 548 DKVK 559
++ K
Sbjct: 275 EQTK 278
>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
Length = 188
Score = 67.3 bits (157), Expect = 1e-11
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Frame = +2
Query: 11 PQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEI 190
P ++G PGSGKGT I +++ HLS+G+LLR Q ++ GE + I GE+
Sbjct: 31 PVRAIIMGPPGSGKGTVSERIVRDFGVEHLSSGELLRHHVQN-HTDLGEEAQAYILKGEL 89
Query: 191 VPVEVTCSL-LHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREI 367
VP E+ L LH+ K G +L+DGFPR G +S+K K+ V+ +
Sbjct: 90 VPDELMVDLILHELDAKKG--NWLLDGFPRTV----GQAETLSEKHKIDVVVNMDVPFAT 143
Query: 368 CTERCLRRGA-AGSGR 412
+R +R A SGR
Sbjct: 144 IVDRIKQRWVHAVSGR 159
>SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31)
Length = 166
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2
Query: 410 RSDDNIESLKKRFNTYLNDTMPIINYYDKLXLVRRINAEEEPDQVFDKVKVAFDE 574
RSDDN +L KR Y + T P+I+YY K + +I+A + PD V+ V AFD+
Sbjct: 103 RSDDNEATLTKRLQAYHSQTTPLIDYYTKRGIHHKIDASKPPDTVYSSVLKAFDD 157
>SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)
Length = 1053
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 14 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLL 118
+VV + G PGS KG+ + + K + +V +SA DL+
Sbjct: 662 RVVIMFGGPGSTKGSIINDLVKMFGFVFISAEDLI 696
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 134 RPGSEYGEMIEEKIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRN 280
RP ++ +I E V + + C+L+ + K G FLI FP N
Sbjct: 293 RPRFDFTADYLVRIYRAECVNLRLHCNLIKGVLDKQGYSAFLIASFPNN 341
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 514 PADKT*FIVIVDDRHCIIQICVESFL 437
P DK +V VD H +Q+C+ +FL
Sbjct: 248 PTDKPRNVVFVDIGHSSLQVCITAFL 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,895,337
Number of Sequences: 59808
Number of extensions: 456623
Number of successful extensions: 1268
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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