Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0435
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    29   0.54 
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    29   0.94 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.2  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.0  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.6  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   6.6  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.6  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.7  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.7  

>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
 Frame = +3

Query: 228 SNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPILYDTDLK--LKNAHVH 401
           S AK+ +    P +SH +DS KS   +D+ +    HT+ Y    L  T      KN    
Sbjct: 201 SRAKSTESTSSPELSHSLDSSKS-IASDMPIHRASHTTGYAAASLTSTSFTPVTKNERAI 259

Query: 402 FDDKERYNNIPTIK-TGYESFDKYEDQI-ISIINDLKNTYGFNNIEASKQSLFDLPVRPG 575
             +++   N   IK  GY        +I I +  D      +N ++ +KQ  +   +   
Sbjct: 260 IAEEDYMLNHTRIKHKGYARIVTNHGEINIELHTDYAPHAVYNFVQLAKQGYYRNTIFHR 319

Query: 576 AIKHLVFAIGEP 611
            I   +   G+P
Sbjct: 320 NIARFMIQGGDP 331


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 426 NIPTIKTGYESFDKYEDQIISIINDLKNTYGFNN 527
           N+   K  Y +F    +  I+ +N+L  TYG++N
Sbjct: 312 NVVATKGSYNTFQGEAESAINNLNELLGTYGYSN 345


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 962

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 43   EFTDTIHN-EIDLQYGPAFSLPYFRTYASSVLMQISRGTSEIAMNSKFPTNRLILSYQLR 219
            + TD I   +  + Y   F+LP+      + L  IS+  SEI+ N K    +  LS++ R
Sbjct: 897  QLTDLIQAIKTGIYYLRMFNLPFHVKQLYTWLAPISKYDSEISFNQKKERRKTFLSFERR 956

Query: 220  QLN 228
              N
Sbjct: 957  GKN 959


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +3

Query: 363 YDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNI---- 530
           YD D    N +  F  K+R   +P I       +   + I    N+L  T+    I    
Sbjct: 457 YDND-DYANIYTSFVVKDRATELPLILQQISEQNMVAEDISD--NELAKTHARYLIGGKS 513

Query: 531 EASKQSLF--DLPVRPGAIKHLVFAIGEPC 614
             SK+ L+  D P RPGA+   + +I E C
Sbjct: 514 SVSKERLYRLDFPERPGALCKFLRSIKEVC 543


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 226 SVVSTDRIISACLLGTLNS*LSPMSLGLSASVHLTHTFGSTAG 98
           S VST    S+    + +S  S +S  L++S+  T TFGST+G
Sbjct: 727 SSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSG 769


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 411 KERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSLFDLPVRPGA 578
           +  Y  +  ++     F   E+  +    D   T GFNN+   K  +  LP RP +
Sbjct: 54  RAHYARMQQMRNQSSEFPDAENTNLRKQQDTLPTTGFNNLPEGKAGMQTLPGRPAS 109


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +3

Query: 270 SHLIDSLKSKHITDVKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTG 449
           ++ ID    KHI D +++   + S+    +LY  D      +  F    R+N IP     
Sbjct: 155 TYAIDENGQKHIVDARMWTEAYMSEVLRSLLYSDD-----TNSRFAGHRRFNPIPNPDAE 209

Query: 450 YESFDKYE 473
              F+  E
Sbjct: 210 LRFFEAAE 217


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -3

Query: 706 P*SAMSYPPMFLKITS*MADSIASSRKHRPIHGSPIAKTKCLIAPGLTGRSNNDCLLASM 527
           P S ++Y   F + +  +A SI S  K  P +   +     ++ PG      N  L  S 
Sbjct: 202 PDSWLTYNAQFAQNSPQLAPSIPSPMKLSPANQQAMPPYPQMLGPGSISSYTNSNLGPSA 261

Query: 526 LLNPYVFFKS 497
              P  FF S
Sbjct: 262 GFRPPTFFSS 271


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 411 KERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQ-SLFDLPVRPGAIKH 587
           +E YN +    +   S++K E+ I   +  + + YG  N + + Q SL  +P+   + K 
Sbjct: 125 EESYNFLTIYFSTLLSYEKVENLIKKSLTVIDSLYGLLNYQINAQHSLGCIPLNQDSFKQ 184

Query: 588 LVFAI 602
           L   I
Sbjct: 185 LKLLI 189


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 189 KQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDV 314
           K+A+     E   S    +  I  PL+S + D L SKH+ D+
Sbjct: 258 KKAEKRFEEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDL 299


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 399  HFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYG 518
            +FD +  Y+ IP+  TG  SF +  D     I     TYG
Sbjct: 962  NFDFRRPYSVIPSRMTGRSSFTQLSDDSDETIILASATYG 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,685
Number of Sequences: 5004
Number of extensions: 71849
Number of successful extensions: 227
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)