Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0435
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656...    31   1.3  
11_06_0580 - 25184019-25184024,25184096-25184851,25184870-251849...    29   5.2  
09_03_0191 - 13322141-13322458,13322767-13323033,13324836-133250...    28   6.9  
08_01_0122 + 967983-968463,970082-970342,970471-971346,971837-97...    28   6.9  
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315...    28   6.9  
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582...    28   6.9  
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365           28   9.1  
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550...    28   9.1  

>07_03_1410 +
           26363538-26363777,26365421-26365475,26365553-26365644,
           26365732-26365787,26366026-26366101,26366790-26366856,
           26367197-26367263,26368276-26368342,26368759-26368842,
           26369749-26369904,26370641-26370718,26371323-26371391,
           26371476-26371541,26371623-26371751,26372862-26372951,
           26373306-26373371,26373768-26373836,26373903-26374007,
           26374374-26374499,26374687-26374745,26374832-26374868,
           26375370-26375519
          Length = 667

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 450 YESFDKYEDQIISI---INDLKNTYGFNNIEASKQSLFDLPVRPGAIKHLVFAIGEPCIG 620
           Y+   K +D ++ +   I     ++   N +A K+++  LPV   A K++V   G P + 
Sbjct: 304 YDVVPKIKDMLLDLDFKIVIADESHFLKNAQA-KRTMHSLPVLQKA-KYVVLLSGTPALS 361

Query: 621 RCFLLDAIESAIYDVIFKNMGGY 689
           R   L     A+Y  ++KN+  Y
Sbjct: 362 RPIELFTQLQALYPTVYKNVNEY 384


>11_06_0580 -
           25184019-25184024,25184096-25184851,25184870-25184927,
           25185306-25185376
          Length = 296

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -3

Query: 544 CLLASMLLNPYVFFKS----LMILMIWSSYLSKDSYPVLMVGML 425
           CL+   LL   VF K     ++ +++W +YLS DS  V ++G L
Sbjct: 40  CLVVVFLLFAAVFRKRCRSRVLSVLLWLAYLSADSVAVFVLGRL 83


>09_03_0191 -
           13322141-13322458,13322767-13323033,13324836-13325048,
           13325153-13325349,13325432-13325636
          Length = 399

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 408 DKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSLFDLPVRPGAIKH 587
           DK+R   +  ++      D ++ ++   I + +  YGF  I+  K  L  +P   G I H
Sbjct: 93  DKKRAEALHALRPSVYKDDNHKPEMAIAITEFRALYGFAAIQELKDVLRTVPEVEGLIGH 152


>08_01_0122 +
           967983-968463,970082-970342,970471-971346,971837-972327
          Length = 702

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 604 VNRVSDDASCSTQSSQPFTM*SSRTWAGTTSLITG 708
           VNR  D+  CS  SS   T+ S    AGT  +I G
Sbjct: 309 VNRDCDNGGCSRSSSSSTTLSSGAILAGTIIIIGG 343


>04_04_1397 -
           33230416-33230742,33230852-33231007,33231130-33231543,
           33234177-33234307,33235076-33235202,33235709-33236209,
           33237624-33237935,33238690-33238719
          Length = 665

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 303 CVYSLDCQSN-VTRAVPRYPCKSLHWIQLSQLIG 205
           CV+   CQ +   R++PR P   L W+Q++   G
Sbjct: 562 CVHQRYCQDDGELRSLPRCPHSHLSWVQITGFFG 595


>01_01_0754 -
           5823076-5823089,5823797-5823911,5823992-5824045,
           5825629-5827251
          Length = 601

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 154 SLGLSASVHLTHTFGSTAGRRPVRIA 77
           S+G  +++ L+H+FG T GR PV +A
Sbjct: 66  SVGPCSTLLLSHSFGYTYGRGPVTVA 91


>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
          Length = 144

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = -3

Query: 475 SSYLSKDSYPVL----MVGMLL*RSLSSKCTWA 389
           SS+  ++++P++    +VG LL R +++ CTWA
Sbjct: 78  SSFPDEETFPIVICETLVGYLLYRMINAGCTWA 110


>03_02_0080 +
           5498638-5498699,5499121-5499190,5499551-5500711,
           5500940-5501029,5501147-5501464
          Length = 566

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 198 DIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITD 311
           D I+ + TT+++    +D+   LVSH IDS+ SK  TD
Sbjct: 138 DSIIVLGTTKAHLPWSEDL--KLVSHCIDSIASKASTD 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,040,502
Number of Sequences: 37544
Number of extensions: 449639
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)