Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0435
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_24194| Best HMM Match : RyR (HMM E-Value=5)                         31   0.76 
SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7)                    31   1.00 
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_9607| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_56167| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.8)            29   5.3  
SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)                    29   5.3  
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   28   9.3  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)                    28   9.3  
SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 363 YDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYED 476
           YD +   K   VH+DD E Y N+      Y+ +D Y+D
Sbjct: 636 YDDNEGSKMVKVHWDDYENYVNVNVNDDDYDDYDDYDD 673


>SB_24194| Best HMM Match : RyR (HMM E-Value=5)
          Length = 211

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 378 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASK 542
           ++KN+  +F+++ R NNI          + + D  + +   +K  +GF N+E  +
Sbjct: 97  RVKNSLEYFENQSRRNNIQVSGIEESEGETWYDAEVKVKEAIKTKFGFENVEIER 151


>SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7)
          Length = 206

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 378 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIE 533
           ++KN+  +F+++ R NNI          + + D  + +   +K  +GF N+E
Sbjct: 97  RVKNSLEYFENQSRRNNIQVSGIEESEGETWYDAEVKVKEAIKTKFGFENVE 148


>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 559 RSNNDCLLASMLLNPYVFFKSLMILMIWSSYLSKDSYPVLMV 434
           RSNN  L+   L  P     + ++ M W   LSKD  PVL+V
Sbjct: 820 RSNNAKLVVISLPVPVAEMTTPLMYMSWLEMLSKDLPPVLLV 861


>SB_9607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 141 DKPRDIGDSYEFKVPNKQADIILSVETTESNA-KTYKDIVVPLVSHLIDSLKSK 299
           DK  +  DS+ F  P   +DIIL VE  E    K    +  P+   + DS K K
Sbjct: 10  DKGNETEDSHPFSKPWDDSDIILEVEEQEFYVHKMILKMASPVFKAMFDSEKGK 63


>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 177 KVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHT 338
           +V     D++   ET  +N    +  + P  +H +  L  KH  D K   +GHT
Sbjct: 2   EVEKSPTDVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKAERLGHT 55


>SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 614 YRTMLPARRNRVSHLRC 664
           Y+TM+  +RNR+SH+ C
Sbjct: 141 YKTMISGQRNRISHIAC 157


>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1214

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -3

Query: 331 PTRNTLTSVMCLLFRLSI 278
           PTRNT+ S++C+L+ +SI
Sbjct: 912 PTRNTIISIICILWGISI 929


>SB_56167| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.8)
          Length = 285

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 608 TVYRTMLPARRNRVSHLRCDLQEHGRVRH-R*SRAHPTSRW 727
           T Y+ M  A  +   H   +LQ HGR+ H R SR  PT+ W
Sbjct: 171 TTYKHM--AHLSSGEHPEYNLQTHGRLIHRRASRIQPTNTW 209


>SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 99  PAVLPNVCVKCTDADKPRDI---GDSYEFKVPNKQADIILSVETTESN 233
           P + P V  K  D    R I   GD     VP +Q D  LSVE + SN
Sbjct: 601 PELHPQVSFKAEDLKGERRILLNGDKTIAVVPKQQCDDFLSVEVSSSN 648


>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
          Length = 870

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 532 KPASNRCSIFLSDRVLS-NTWSSLLVNRVSDDASCST 639
           K ASNR    LSD V S NT  SL V ++SD  +CS+
Sbjct: 335 KGASNRN---LSDNVTSGNTCDSLAVRKLSDSKACSS 368


>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 431 PHHQD-WV*ILRQIRGPNHQYHQRLEKYIWIQQHRSQQ 541
           P  +D WV +++Q     H+  Q++ K++ + Q RSQQ
Sbjct: 698 PESKDGWVYVVQQRTARQHELPQQMGKWVPLTQTRSQQ 735


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 213 VETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPILYD-TDLKL-K 386
           +E        ++D +  L SH   +    H+   + FL   T+++P P++Y   DL L +
Sbjct: 200 IEANNITTVIFQDSMPDLFSHFQHNNVEAHMYASQWFLTMFTARFPLPMVYSIMDLILCE 259

Query: 387 NAHVHF 404
             HV F
Sbjct: 260 GTHVIF 265


>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
          Length = 782

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
 Frame = +3

Query: 99  PAVLPNVCVKCTDADKPRDI---GDSYEFKVPNKQADIILSVETTESNAKTYKD---IVV 260
           P + P V  K  D    R I   GD     VP +Q D  LSVE T       +D   +  
Sbjct: 591 PELHPQVLFKAEDPKGERRILLNGDKTIAVVPKEQCDDYLSVEVTSKKVGPRRDASTVYY 650

Query: 261 PLVSHLIDS 287
           P  S  +DS
Sbjct: 651 PCSSATMDS 659


>SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 189 KQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPILYD 368
           K  DI +++E ++   KT K    P V  + D  +   I   K   +G  S+ PY     
Sbjct: 83  KAIDIAITMEQSQIQLKTMKG-EDPSVFKMHDWKEELEINGKKAAFIGQCSQMPYDTYKS 141

Query: 369 TDLK 380
            D+K
Sbjct: 142 LDMK 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,836,571
Number of Sequences: 59808
Number of extensions: 539988
Number of successful extensions: 1801
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1773
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)